View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_74 (Length: 278)
Name: NF5717_low_74
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_74 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 61 - 270
Target Start/End: Original strand, 27215950 - 27216159
Alignment:
| Q |
61 |
tctgaagttgatattgaggttgtttgatgattttcttataattttatgtgcatcaatcattcaacatcatcatattctaccctataaaattaactttaaa |
160 |
Q |
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| T |
27215950 |
tctgaagttgatattgaggttgtttgatgattttcttataattttatgtgtagcaatcattcaacatcatcatattctaccctataaaattaactttaaa |
27216049 |
T |
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| Q |
161 |
aacctaatatttattttttataagatctttgtaatactaatatattactatataaattagttttctatttattttccgaatactatataaattagttgct |
260 |
Q |
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| T |
27216050 |
aacctaatatttattttttctaagatctttgtaatactaatatattactatataaattagttttctatttattttacgaatactatataaattagttgct |
27216149 |
T |
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| Q |
261 |
ttttcttctc |
270 |
Q |
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|||||||||| |
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| T |
27216150 |
ttttcttctc |
27216159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 132 - 264
Target Start/End: Original strand, 27222003 - 27222127
Alignment:
| Q |
132 |
atattctaccctataaaattaactttaaaaacctaatatttattttttataagatctttgtaatactaatatattactatataaattagttttctattta |
231 |
Q |
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| T |
27222003 |
atattgtacactgtaaaattaactttaaaaacctaatattt---ttttataagatctttgtattactaatatattactatataaa-tatttt----ttta |
27222094 |
T |
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| Q |
232 |
ttttccgaatactatataaattagttgcttttt |
264 |
Q |
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| T |
27222095 |
ttttacgaatactatatatattacttgtttttt |
27222127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 61 - 150
Target Start/End: Original strand, 27221871 - 27221960
Alignment:
| Q |
61 |
tctgaagttgatattgaggttgtttgatgattttcttataattttatgtgcatcaatcattcaacatcatcatattctaccctataaaat |
150 |
Q |
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| T |
27221871 |
tctgaagttgatattgatgtttttagaggattttcttataattttatgtgtatagatcattcaacatcatcacattgtacactataaaat |
27221960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 27215890 - 27215928
Alignment:
| Q |
1 |
tgtacgtattttagtgttagatatacttattaaaattac |
39 |
Q |
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| T |
27215890 |
tgtacgtattttagtgttagatatacatattaaaattac |
27215928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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