View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_76 (Length: 271)
Name: NF5717_low_76
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Original strand, 53054083 - 53054341
Alignment:
| Q |
1 |
actagtacaatattgtaggcaggggggccattttataacgttgaattgggaaggcgtgatgggagagtatctactatagcaagtgttcaaagaagtctac |
100 |
Q |
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| T |
53054083 |
actagtacaatattgtaggcaggggggccattttataatgttgaattgggaaggcgtgatgggagagtatctactatagcaagtgttcaaagaagtctac |
53054182 |
T |
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| Q |
101 |
ctggccctcatttcaatttgaatcagcttaataacatgtttaatctccatggcctctctcaaacggatatggttgcattatcaggtactgattaatttcc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53054183 |
ctggccctcatttcaatttgaatcagcttaataacatgtttaatctccatggcctctctcaaacggatatggttgcattatcaggtactgattaatttcc |
53054282 |
T |
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| Q |
201 |
ttaccatatagtatatacttatttttaat----tctatatatgaaaagtgatgtgttat |
255 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
53054283 |
ttaccatatagtatatacttatttttaattctatctatatatgaaaagtgatgtgttat |
53054341 |
T |
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