View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_low_85 (Length: 254)
Name: NF5717_low_85
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_85 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 97 - 237
Target Start/End: Complemental strand, 5441924 - 5441784
Alignment:
| Q |
97 |
ggcttaccagctcgtcacttttcctatgtgaagaacattgatcctgggttacctttgtttctattcaactacactgataggaagctacatggaatttttg |
196 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5441924 |
ggcttaccagctcgacacttttcctatgtgaagaacattgatcctgggttacctttgtttctattcaactacactgataggaagctacatggaatttttg |
5441825 |
T |
|
| Q |
197 |
aggcatctagcatgggaaagatgtatatagacccttatgct |
237 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5441824 |
aggcatctagcatgggaaagatgtatatagacccttatgct |
5441784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 5442011 - 5441957
Alignment:
| Q |
1 |
cacttttaggcattatatagtgataactcatcatttactgtggggatatacgatca |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
5442011 |
cacttttaggcattatatagtgataactcatcatttactgt-gggatatacgatca |
5441957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 3855931 - 3856055
Alignment:
| Q |
112 |
cacttttcctatgtgaagaacattgatcctgggttacctttgtttctattcaactacactgataggaagctacatggaatttttgaggcatctagcatgg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||||| ||||||||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||| || |
|
|
| T |
3855931 |
cacttttcctatgtgaagaatattgattccgggttgcctttgtttctattcaattatactgatagaaagcttcatgggatttttgaggcatctagcaagg |
3856030 |
T |
|
| Q |
212 |
gaaagatgtatatagacccttatgc |
236 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
3856031 |
gaaaaatgtatatagacccttatgc |
3856055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 3864688 - 3864812
Alignment:
| Q |
112 |
cacttttcctatgtgaagaacattgatcctgggttacctttgtttctattcaactacactgataggaagctacatggaatttttgaggcatctagcatgg |
211 |
Q |
| |
|
|||||||||||||||||||| |||||| | ||||| ||||||||||||||||| || |||||||| ||||| ||||| ||||||||||||||||||| || |
|
|
| T |
3864688 |
cacttttcctatgtgaagaatattgattccgggttgcctttgtttctattcaattatactgatagaaagcttcatgggatttttgaggcatctagcaagg |
3864787 |
T |
|
| Q |
212 |
gaaagatgtatatagacccttatgc |
236 |
Q |
| |
|
|||| |||||||||||||||||||| |
|
|
| T |
3864788 |
gaaaaatgtatatagacccttatgc |
3864812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 200
Target Start/End: Complemental strand, 25961015 - 25960927
Alignment:
| Q |
112 |
cacttttcctatgtgaagaacattgatcctgggttacctttgtttctattcaactacactgataggaagctacatggaatttttgaggc |
200 |
Q |
| |
|
||||| |||||||| ||||| ||| |||||||| ||| | ||||| || ||||||| |||||||| ||| ||||||||||||||||| |
|
|
| T |
25961015 |
cacttctcctatgttaagaatattcgacctgggttgcctctttttctgtttaactacagtgataggacgcttcatggaatttttgaggc |
25960927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University