View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_86 (Length: 253)
Name: NF5717_low_86
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_86 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 30300935 - 30300704
Alignment:
| Q |
1 |
ccaaaaccgtaaccccttcatcaactctcccatttttcaccaacccatgtatcaaaacattataaacaacaacatcaacaacaatcccttcctctttcat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30300935 |
ccaaaaccgtaaccccttcatcaactctcccatttttcaccaacccatgtatcaaaacattataaacaacaacatcaacaacaatcccttcctctttcat |
30300836 |
T |
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| Q |
101 |
cctctccaacaatccaaaaccttcatccaccatccctttctcacacaacccattcataatcgtagcaaaagtcctctcattcctcttcaaacccatctta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| |
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| T |
30300835 |
cctctccaacaatccaaaaccttcatccaccatccctttctcacacaacccattcataattgtagcaaaagtccgctcattcctcttcaaacccatctta |
30300736 |
T |
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| Q |
201 |
ggaaattcatcaaacaccttaaacgcactttc |
232 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
30300735 |
ggaaattcatcaaacaccttaaacgcactttc |
30300704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 165; Significance: 2e-88; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 63964 - 64196
Alignment:
| Q |
1 |
ccaaaaccgtaaccccttcatcaactctcccatttttcaccaacccatgtatcaaaacattataaacaacaacatcaacaacaatcccttcctctttcat |
100 |
Q |
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|||||||| ||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
63964 |
ccaaaaccctaatcccttcatcaactctctcatttttcaccaacccatgtatcaaaacattgtaaacaacaacatcaacaacaatcccttcctctttcat |
64063 |
T |
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| Q |
101 |
cctctccaacaatccaaaaccttcatccaccatccctttctcacacaacccattcataatcgtagcaaaagtcctctcattcctcttcaaacccatctta |
200 |
Q |
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||||||||||||||||||||| ||||||||||||||||| ||||||||||||| ||||| || |||||||| || ||||| || |||||| |||||||| |
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| T |
64064 |
cctctccaacaatccaaaaccatcatccaccatccctttatcacacaacccatgcataagtgttgcaaaagttctttcatttcttttcaaatccatctta |
64163 |
T |
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| Q |
201 |
ggaaattcatcaaacaccttaaacgcactttct |
233 |
Q |
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||||||||||||||||||||||| |||| |||| |
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| T |
64164 |
ggaaattcatcaaacaccttaaaagcaccttct |
64196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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