View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5717_low_88 (Length: 251)
Name: NF5717_low_88
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_88 |
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Alignment Details
Target: chr6 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 4191459 - 4191695
Alignment:
| Q |
5 |
cgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaaggtctcttgaa |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191459 |
cgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaaggtctcttgaa |
4191558 |
T |
|
| Q |
105 |
ctacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttatgatt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4191559 |
ctacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttatgatt |
4191658 |
T |
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| Q |
205 |
tgggaaaaagacggttattaaggaagtatgagaataa |
241 |
Q |
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| T |
4191659 |
tgggaaaaagacggttattaaggaagtatgagaataa |
4191695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 52211014 - 52211254
Alignment:
| Q |
1 |
tagccgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaaggtctct |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
52211014 |
tagccgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaagttctct |
52211113 |
T |
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| Q |
101 |
tgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttat |
200 |
Q |
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| T |
52211114 |
tgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttat |
52211213 |
T |
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| Q |
201 |
gatttgggaaaaagacggttattaaggaagtatgagaataa |
241 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| |
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| T |
52211214 |
gatttgggaaaaagacggttattaaggaagtgtgagaataa |
52211254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 165; Significance: 2e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 47857789 - 47858029
Alignment:
| Q |
1 |
tagccgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaaggtctct |
100 |
Q |
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|||| ||||||||||||||||| ||||| ||||| |||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
47857789 |
tagctgttggcacagcaaaggggctgcagtttacacccaaaaggagtttaactgttggatttattcatatatataggtttctagatgatggaaggtctct |
47857888 |
T |
|
| Q |
101 |
tgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttat |
200 |
Q |
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|||||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||||| | ||| |
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| T |
47857889 |
tgaacttcttcacaaaactcaggttgagggtgttcctcttgctctatgtcagtttcaaggaagattacttgcaggaataggacctgtgctcaggctatat |
47857988 |
T |
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| Q |
201 |
gatttgggaaaaagacggttattaaggaagtatgagaataa |
241 |
Q |
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||||||||||||||||| |||||||| || | ||||||||| |
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| T |
47857989 |
gatttgggaaaaagacgattattaagaaaatgtgagaataa |
47858029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 47716294 - 47716054
Alignment:
| Q |
1 |
tagccgttggcacagcaaagggactgcaatttacgcccagaaggagtttaactgctggatttattcatatatataggtttctagaggatggaaggtctct |
100 |
Q |
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|||| ||||| ||||| ||||||||||| ||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |
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| T |
47716294 |
tagctgttggtacagctaagggactgcagtttacacccaaaaggagtttaactgctggattcattcatatatataggtttctagatgatggaaggtctct |
47716195 |
T |
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| Q |
101 |
tgaactacttcacaaaactcaggttgaaggtgttcctcttgctcttagtcagtttcagggaagattacttgcaggaataggacctgttctcaggttttat |
200 |
Q |
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|||||| || ||||||||||||||||| ||||||||||| ||||| |||||||||| |||||||||||||||||||| |||||||| |||||| | ||| |
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| T |
47716194 |
tgaacttctccacaaaactcaggttgagggtgttcctctcgctctatgtcagtttcaaggaagattacttgcaggaattggacctgtactcaggctatat |
47716095 |
T |
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| Q |
201 |
gatttgggaaaaagacggttattaaggaagtatgagaataa |
241 |
Q |
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||||||||||||||||| |||||||| || | ||||||||| |
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| T |
47716094 |
gatttgggaaaaagacgattattaagaaaatgtgagaataa |
47716054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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