View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_low_89 (Length: 251)
Name: NF5717_low_89
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_89 |
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| [»] chr6 (8 HSPs) |
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| [»] scaffold0060 (1 HSPs) |
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| [»] scaffold0016 (1 HSPs) |
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| [»] scaffold0272 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 15 - 251
Target Start/End: Original strand, 33710912 - 33711147
Alignment:
| Q |
15 |
ggaaggttgaacaatttcgaacattcaaacaacctctagctcaactttaaacaaggtacatattttgaagtatataagtaaatcatagcatttcttttag |
114 |
Q |
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| T |
33710912 |
ggaagattgaacaatttcgaacattcaaacaacctctagctcaactttaaacaagttatatattttgaagtatataagcaaatcatagcatttcttttag |
33711011 |
T |
|
| Q |
115 |
ttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttaca |
214 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33711012 |
ttaagatgggactatttttagtg-ctcttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttaca |
33711110 |
T |
|
| Q |
215 |
ataagaaagcatttatccattggatgtgctcctctac |
251 |
Q |
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|| | |||||||||||||||||||||||||||||||| |
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| T |
33711111 |
atcataaagcatttatccattggatgtgctcctctac |
33711147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 24 - 219
Target Start/End: Original strand, 21198823 - 21199019
Alignment:
| Q |
24 |
aacaatttcgaacattcaaacaacctctagctcaactttaaacaaggtacatattttgaagtatataagtaa-atcatagcatttcttttagttaagatg |
122 |
Q |
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||||||||| |||||||||| | ||| |||||||||| |||||||| |||| |||||||||||||| || |||||||||||| ||||||| || || |
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| T |
21198823 |
aacaatttcaaacattcaaatcaactcaggctcaacttttaacaaggtgcataccttgaagtatataagcaatatcatagcattttttttagtcgaggtg |
21198922 |
T |
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| Q |
123 |
ggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataag |
219 |
Q |
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||||||||||||||||| ||||| |||| |||| ||| ||| ||||||||||||||||||| |||| | ||||||||||||||||||| ||||| |
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| T |
21198923 |
agactatttttagtgcccaatttcttgcttttttaagtttcagttgagatgaaacataaaagaaaaattcattaacaactcataatcttactataag |
21199019 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 96 - 239
Target Start/End: Original strand, 21313702 - 21313845
Alignment:
| Q |
96 |
atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagt |
195 |
Q |
| |
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|||||||||||| ||| || || ||||||||| |||||| ||| |||||| |||||||||| ||| ||||||| |||||||||||||||||||| ||| |
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| T |
21313702 |
atcatagcatttgtttctgtccaggtgggactatatttagttccctttttcttgcttctttatgtttcagtcgagttgaaacataaaagaagaattcagt |
21313801 |
T |
|
| Q |
196 |
aacaactcataatcttacaataagaaagcatttatccattggat |
239 |
Q |
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||| | ||||||| || | ||||| || | |||||| ||||||| |
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| T |
21313802 |
aacgattcataattttcctataagcaaacgtttatcaattggat |
21313845 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 21173086 - 21173206
Alignment:
| Q |
121 |
tgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataaga |
220 |
Q |
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||||| ||| ||||||| ||||||||| ||||||||| ||| | |||||||| ||||||||||||||||| | |||||||||||||| ||| ||||| |
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| T |
21173086 |
tgggattatatttagtgtcccttttcttgcttctttaattttcaatcgagatggaacataaaagaagaattcaacaacaactcataatcataccataagc |
21173185 |
T |
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| Q |
221 |
aagc---atttatccattgga |
238 |
Q |
| |
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|||| |||||||||||||| |
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| T |
21173186 |
aagcataatttatccattgga |
21173206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 21166711 - 21166754
Alignment:
| Q |
195 |
taacaactcataatcttacaataagaaagcatttatccattgga |
238 |
Q |
| |
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||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
21166711 |
taacagctcataatcttacaataagaaagcatttacccattgga |
21166754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 173 - 236
Target Start/End: Complemental strand, 20998416 - 20998350
Alignment:
| Q |
173 |
gaaacataaaagaagaatttagtaacaac---tcataatcttacaataagaaagcatttatccattg |
236 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||||||||||| ||||| |||||| ||||||||| |
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|
| T |
20998416 |
gaaacttaaaagaagaatttagcaacaacaactcataatcttactataagcaagcatctatccattg |
20998350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 198 - 238
Target Start/End: Original strand, 21218114 - 21218154
Alignment:
| Q |
198 |
caactcataatcttacaataagaaagcatttatccattgga |
238 |
Q |
| |
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|||||||||||||||| ||||| |||||||||||||||||| |
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| T |
21218114 |
caactcataatcttactataagtaagcatttatccattgga |
21218154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 190
Target Start/End: Original strand, 21108810 - 21108904
Alignment:
| Q |
96 |
atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaat |
190 |
Q |
| |
|
|||||||| ||||||| | | || |||||||||||| ||||||||||||| |||||||| ||| |||| ||||||||| ||||| |||||| |
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| T |
21108810 |
atcatagcctttctttcattagaggtgggactattttctgtgccccttttcttttttctttatgtttcagtcaagatgaaacgtaaaacaagaat |
21108904 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 33 - 213
Target Start/End: Complemental strand, 21888 - 21709
Alignment:
| Q |
33 |
gaacattcaaacaacctctagctcaactttaaacaaggtacatattttgaagtatataagtaaatcatagcatttcttttagttaagatgggactatttt |
132 |
Q |
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|||||||||||||||| | | |||||||||| | ||||||||||||||||||||| || |||||||| |||||||||||||| || ||||||||| || |
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| T |
21888 |
gaacattcaaacaaccccacacccaactttaaatatggtacatattttgaagtatatgagcaaatcata-catttcttttagttgaggtgggactatatt |
21790 |
T |
|
| Q |
133 |
tagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttac |
213 |
Q |
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|
||||||||||||| | ||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
21789 |
tagtgccccttttattgcttctttaagtttaagtcgagatgaaacataaaagaacaatttagtaacaactcataatcttac |
21709 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 121 - 238
Target Start/End: Original strand, 24943669 - 24943786
Alignment:
| Q |
121 |
tgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagtaacaactcataatcttacaataaga |
220 |
Q |
| |
|
||||||||||||||||| ||||||||| ||||||||| ||| |||||||||| ||||||||||||||||| || |||||||||||||| ||| ||||| |
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| T |
24943669 |
tgggactatttttagtgtcccttttcttgcttctttaagtttcagtcgagatggaacataaaagaagaattcagcaacaactcataatcataccataagc |
24943768 |
T |
|
| Q |
221 |
aagcatttatccattgga |
238 |
Q |
| |
|
|||||||||||||||||| |
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| T |
24943769 |
aagcatttatccattgga |
24943786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0016 (Bit Score: 49; Significance: 4e-19; HSPs: 1)
Name: scaffold0016
Description:
Target: scaffold0016; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 70906 - 70767
Alignment:
| Q |
96 |
atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatttagt |
195 |
Q |
| |
|
|||||||||||| ||| || || ||| |||||||||||||| ||||||| |||| |||| ||||||| |||||| ||||||||||||||| | | |
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| T |
70906 |
atcatagcatttttttcggtcgaggtggaactatttttagtgcatcttttcttgctt-tttaagtttaagttgagatggaacataaaagaagaactcatc |
70808 |
T |
|
| Q |
196 |
aacaactcataatcttacaataagaaagcatttatccattg |
236 |
Q |
| |
|
|||||||||||||||||| | ||| |||||||||||||||| |
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|
| T |
70807 |
aacaactcataatcttactacaagcaagcatttatccattg |
70767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0272
Description:
Target: scaffold0272; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 191
Target Start/End: Complemental strand, 8811 - 8717
Alignment:
| Q |
96 |
atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgcttctttatatttaagtcgagatgaaacataaaagaagaatt |
191 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||||||| | ||||| | || |||| ||| |||||||||||||||||||||||||||| |
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|
| T |
8811 |
atcatagcatttctttcggtcgaggtgggactatttttagtgctcattttcatgttt-tttaagttttagtcgagatgaaacataaaagaagaatt |
8717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0272; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 235
Target Start/End: Complemental strand, 3797 - 3737
Alignment:
| Q |
175 |
aacataaaagaagaatttagtaacaactcataatcttacaataagaaagcatttatccatt |
235 |
Q |
| |
|
||||||||||||||||| || ||||||||| |||||||| ||||| ||| |||||| |||| |
|
|
| T |
3797 |
aacataaaagaagaattcagcaacaactcaaaatcttactataagcaagtatttattcatt |
3737 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 96 - 152
Target Start/End: Original strand, 13119797 - 13119853
Alignment:
| Q |
96 |
atcatagcatttcttttagttaagatgggactatttttagtgccccttttctcgctt |
152 |
Q |
| |
|
||||||||||||||||| || || ||| || |||||||||||||||||||| |||| |
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|
| T |
13119797 |
atcatagcatttcttttggtcgaggtggaacaatttttagtgccccttttcttgctt |
13119853 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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