View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_low_9 (Length: 609)

Name: NF5717_low_9
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5717_low_9
NF5717_low_9
[»] chr7 (6 HSPs)
chr7 (10-355)||(25273221-25273563)
chr7 (402-583)||(25273610-25273791)
chr7 (517-581)||(22964089-22964153)
chr7 (517-581)||(22972333-22972397)
chr7 (475-523)||(22964204-22964252)
chr7 (475-523)||(22972448-22972496)
[»] chr1 (1 HSPs)
chr1 (402-568)||(29095722-29095884)
[»] chr8 (3 HSPs)
chr8 (517-583)||(26572201-26572267)
chr8 (517-581)||(12586260-12586324)
chr8 (475-523)||(12586161-12586209)
[»] chr2 (2 HSPs)
chr2 (523-581)||(22319093-22319151)
chr2 (475-523)||(22318988-22319036)
[»] chr3 (2 HSPs)
chr3 (475-523)||(49601198-49601246)
chr3 (517-581)||(49601297-49601361)
[»] chr5 (1 HSPs)
chr5 (323-354)||(3496888-3496919)
[»] chr4 (1 HSPs)
chr4 (427-470)||(6495728-6495771)


Alignment Details
Target: chr7 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 10 - 355
Target Start/End: Original strand, 25273221 - 25273563
Alignment:
Q  10 catcatcatcatcaaaacaaaaacaaaggccatatgaaatatttgtttgagagagaaaggaaatcatnnnnnnntaagataggagaagaagtaggagcta 109  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  25273221 catcatcatcatcaaaacaaaaacaaatgccatatgaaatatttgtttgagagagaaaggaaatcataaaaaaataagataggagaagaagtaggagcta 25273320  T
Q  110 gctacagcatcactgcaaccacacactgatccaacatcgcaacttccaccattagcaaatcattctctcttgctatccactctggcgacctcgctctcca 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25273321 gctacagcatcactgcaaccacacactgatccaacatcgcaacttccaccattagcaaatcattctctcttgctatccactctggcgacctcgctctcca 25273420  T
Q  210 caccgtcgtcgttttaactttaaactaaccgctgacaaacacttccaccatcccaccacctttgatacgccagccaccacaagcacctccgtcgtcatcg 309  Q
    | || ||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||   ||||||||    
T  25273421 cgccatcgtcgttttaactttaaacttaccgctgacaaacacttccaccatcccatcacctttgatacgccagccaccacaagcacctc---cgtcatcg 25273517  T
Q  310 tacagcggtagtagcggagccaggaattttaactagtggaggcacc 355  Q
    |||||||||||||||||||||| |||||||||||||||||||||||    
T  25273518 tacagcggtagtagcggagccaagaattttaactagtggaggcacc 25273563  T

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Target: chr7; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 402 - 583
Target Start/End: Original strand, 25273610 - 25273791
Alignment:
Q  402 caatcacaataaaaacatatttctgtatataagtaactaaacaaccatttcgtcattgatcactcatgcttttctcttaaagttgtcgatcaatcaattg 501  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  25273610 caatcacaataaaaacatatttctgtatataagtgactaaacaatcatttcgtcattgatcactcatgcttttctcttaaagttgtcgatcaatcacttg 25273709  T
Q  502 atagaacaattaaacttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttcatgg 583  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25273710 atagaacaattgaacttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttcatgg 25273791  T

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Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 517 - 581
Target Start/End: Complemental strand, 22964153 - 22964089
Alignment:
Q  517 ttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttcat 581  Q
    |||| ||||||||||||||||||  | |||||||||||| ||||| |||||||||||||||||||    
T  22964153 ttgataggtatcatccatatttgggatgacaacttcatgatgttcacaaaataatgaaacttcat 22964089  T

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Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 517 - 581
Target Start/End: Complemental strand, 22972397 - 22972333
Alignment:
Q  517 ttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttcat 581  Q
    |||| ||||||||||||||||||  | |||||||||||| ||||| ||||| |||||||||||||    
T  22972397 ttgataggtatcatccatatttgggatgacaacttcatgatgttcacaaaacaatgaaacttcat 22972333  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 523
Target Start/End: Complemental strand, 22964252 - 22964204
Alignment:
Q  475 ctcttaaagttgtcgatcaatcaattgatagaacaattaaacttgaaag 523  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  22964252 ctcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 22964204  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 523
Target Start/End: Complemental strand, 22972496 - 22972448
Alignment:
Q  475 ctcttaaagttgtcgatcaatcaattgatagaacaattaaacttgaaag 523  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  22972496 ctcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 22972448  T

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Target: chr1 (Bit Score: 78; Significance: 5e-36; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 402 - 568
Target Start/End: Complemental strand, 29095884 - 29095722
Alignment:
Q  402 caatcacaataaaaacatatttctgtatataagtaactaaacaaccatttcgtcattgatcactcatgcttttctcttaaagttgtcgatcaatcaattg 501  Q
    ||||| |||||||||||| ||||| ||| ||||||||||||||   || | ||||||||||||||||||||||||    ||||||||||||||||| |||    
T  29095884 caatctcaataaaaacatctttctctatgtaagtaactaaacagttatatagtcattgatcactcatgcttttct----aagttgtcgatcaatcacttg 29095789  T
Q  502 atagaacaattaaacttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaat 568  Q
    ||||||||||| |||||||| |||||||||||||||    |||||||||||||| ||||| ||||||    
T  29095788 atagaacaattgaacttgaatggtatcatccatattcagcacgacaacttcatgatgttcacaaaat 29095722  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 517 - 583
Target Start/End: Original strand, 26572201 - 26572267
Alignment:
Q  517 ttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttcatgg 583  Q
    |||| |||||||||||||||||| || |||||||||||| ||||| ||||| |||||||||| ||||    
T  26572201 ttgataggtatcatccatatttggaatgacaacttcatgatgttcacaaaacaatgaaacttgatgg 26572267  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 517 - 581
Target Start/End: Original strand, 12586260 - 12586324
Alignment:
Q  517 ttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttcat 581  Q
    |||| ||||||||||||||||||  | |||||||||||| ||||| ||||| |||||||||||||    
T  12586260 ttgataggtatcatccatatttgggatgacaacttcatgatgttcacaaaaaaatgaaacttcat 12586324  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 523
Target Start/End: Original strand, 12586161 - 12586209
Alignment:
Q  475 ctcttaaagttgtcgatcaatcaattgatagaacaattaaacttgaaag 523  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  12586161 ctcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 12586209  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 523 - 581
Target Start/End: Original strand, 22319093 - 22319151
Alignment:
Q  523 ggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttcat 581  Q
    |||||||||||||||||  | |||||||||||| ||||| ||||| |||||||||||||    
T  22319093 ggtatcatccatatttgggatgacaacttcatgatgttcacaaaacaatgaaacttcat 22319151  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 523
Target Start/End: Original strand, 22318988 - 22319036
Alignment:
Q  475 ctcttaaagttgtcgatcaatcaattgatagaacaattaaacttgaaag 523  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  22318988 ctcttcaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 22319036  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 475 - 523
Target Start/End: Original strand, 49601198 - 49601246
Alignment:
Q  475 ctcttaaagttgtcgatcaatcaattgatagaacaattaaacttgaaag 523  Q
    ||||| ||||||||||||||||| ||||||||| |||| ||||||||||    
T  49601198 ctcttgaagttgtcgatcaatcacttgatagaagaattgaacttgaaag 49601246  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 581
Target Start/End: Original strand, 49601297 - 49601361
Alignment:
Q  517 ttgaaaggtatcatccatatttgaaacgacaacttcatgttgttcgcaaaataatgaaacttcat 581  Q
    |||| ||||||||||||||| ||  | |||||||||||| ||||| ||||| |||||||||||||    
T  49601297 ttgataggtatcatccatatctgggatgacaacttcatgatgttcacaaaacaatgaaacttcat 49601361  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 323 - 354
Target Start/End: Original strand, 3496888 - 3496919
Alignment:
Q  323 gcggagccaggaattttaactagtggaggcac 354  Q
    ||||||||||||||||||||||||||||||||    
T  3496888 gcggagccaggaattttaactagtggaggcac 3496919  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 427 - 470
Target Start/End: Complemental strand, 6495771 - 6495728
Alignment:
Q  427 tatataagtaactaaacaaccatttcgtcattgatcactcatgc 470  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||||    
T  6495771 tatataagtaactaaacaatcatttagtcattgattactcatgc 6495728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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