View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5717_low_92 (Length: 251)

Name: NF5717_low_92

Description: NF5717

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5717_low_92

[»] chr5 (5 HSPs)

Alignment Details

Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 5)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 228; E-Value: 1e-126

Query Start/End: Original strand, 12 - 251

Target Start/End: Original strand, 13878497 - 13878736

Alignment:

Q	12	taatatttgtaggtaagattgagtaattaactcaagctggtttcataatagaatgagaccatctatctgctcccaatatcttaacttgctgcaaaccaat	111	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13878497	taatatttgtaggtaagattgagtgattaactcaagctggtttcataatagattgagaccatctatctgctcccaatatcttaacttgctgcaaaccaat	13878596	T

Q	112	gataatcaatctatatacctattcaactcacaggttaacatgataataaactgcaaaattgtcctattcaaagtctccatttggagataactaaccctcg	211	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	13878597	gataatcaatctatatacctattcaactcacaggttaacatgataataaactgcaaaattgtcctattcaaagtctccatttggagataactcaccctcg	13878696	T

Q	212	ctcttctctttagctttttgaactgtcgatagattcttct	251	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	13878697	ctcttctctttagctttttgaactgtcgatagattcttct	13878736	T

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Target: chr5; HSP #2

Raw Score: 51; E-Value: 2e-20

Query Start/End: Original strand, 39 - 153

Target Start/End: Complemental strand, 14367182 - 14367071

Alignment:

Q	39	taactcaagctggtttcataatagaatgagaccatctatctgctcccaatatcttaacttgctgcaaaccaatga-taatcaatctatatacctattcaa	137	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\| \|
T	14367182	taacacaagctggttttatattagaatgagaccatct----gctcccaatatctgaacttgctgtaaaccaaatagtaatcaatctaaattcctattcca	14367087	T

Q	138	ctcacaggttaacatg	153	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	14367086	ctcacaggttaacatg	14367071	T

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Target: chr5; HSP #3

Raw Score: 42; E-Value: 0.000000000000006

Query Start/End: Original strand, 157 - 210

Target Start/End: Original strand, 16024811 - 16024864

Alignment:

Q	157	ataaactgcaaaattgtcctattcaaagtctccatttggagataactaaccctc	210	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	16024811	ataaactgcaaaattatcctcttcaaagtctccatttggagataactcaccctc	16024864	T

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Target: chr5; HSP #4

Raw Score: 37; E-Value: 0.000000000006

Query Start/End: Original strand, 39 - 124

Target Start/End: Original strand, 13881258 - 13881339

Alignment:

Q	39	taactcaagctggtttcataatagaatgagaccatctatctgctcccaatatcttaacttgctgcaaaccaatgataatcaatcta	124	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	13881258	taacacaagctggttttatgataggatgagaccatct----gcttccaatatcttaactttctgcaatccaatgatagtcaatcta	13881339	T

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Target: chr5; HSP #5

Raw Score: 30; E-Value: 0.00000008

Query Start/End: Original strand, 157 - 251

Target Start/End: Original strand, 13884122 - 13884211

Alignment:

Q	157	ataaactgcaaaattgtcctattcaaagtctccatttggagataactaaccctcgctcttctctttagctttttgaactgtcgatagattcttct	251	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|
T	13884122	ataaactgaaaaattaacctcttcaaagtttccatttggagataact----cacactcttctcttttac-ttttgaactgtcgatcgattcttct	13884211	T

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