View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5717_low_95 (Length: 250)
Name: NF5717_low_95
Description: NF5717
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5717_low_95 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 8 - 250
Target Start/End: Original strand, 45380669 - 45380912
Alignment:
| Q |
8 |
cgaagaaaattcagctaagagataagaactaacgcacatttgtatcaacacatactctgacaaaaattagtcacggtcaatgcgatcggacctgtaacat |
107 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45380669 |
cgaagaaaattcagctaggagataagaactaacgcacatttgtatcaacacatactctgacaaaaattagtcacggtcaatgcgatcggacctgtaacat |
45380768 |
T |
|
| Q |
108 |
ggnnnnnnnttatgc-atttcttttccttgtcataaacatcacctatctgtcttttctcttcctatttagttttatcctagaggtatatactatacacaa |
206 |
Q |
| |
|
|| |||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |||||| ||||||||| |
|
|
| T |
45380769 |
ggaaaagaattatgcttttttttttccttgtcataaacatcacctatctgtcttttcccttcctatttggttttatcctagagttatatattatacacaa |
45380868 |
T |
|
| Q |
207 |
tttcctaatcttgtgaaaatgcaattctattattaaaaggaatt |
250 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45380869 |
tctcctaatcttgtgaaaatgcaattctattattaaaaggaatt |
45380912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University