View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5718-Insertion-1 (Length: 1083)

Name: NF5718-Insertion-1
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5718-Insertion-1
NF5718-Insertion-1
[»] chr7 (24 HSPs)
chr7 (426-926)||(9263399-9263905)
chr7 (426-926)||(9267678-9268184)
chr7 (431-862)||(9262786-9263221)
chr7 (557-862)||(9267319-9267625)
chr7 (235-389)||(9244898-9245052)
chr7 (244-389)||(9260930-9261075)
chr7 (8-113)||(9244713-9244818)
chr7 (310-389)||(19142365-19142444)
chr7 (310-389)||(20741764-20741843)
chr7 (32-114)||(9248953-9249035)
chr7 (343-389)||(20053632-20053678)
chr7 (312-389)||(232224-232300)
chr7 (349-389)||(4876719-4876759)
chr7 (311-390)||(17915983-17916062)
chr7 (343-389)||(19842132-19842178)
chr7 (312-389)||(17919125-17919202)
chr7 (886-926)||(9223450-9223490)
chr7 (864-926)||(9275909-9275973)
chr7 (864-926)||(9282590-9282654)
chr7 (864-926)||(9293561-9293625)
chr7 (311-383)||(8807819-8807891)
chr7 (401-436)||(9267633-9267668)
chr7 (304-374)||(8106061-8106131)
chr7 (343-389)||(10983391-10983437)
[»] scaffold0653 (2 HSPs)
scaffold0653 (235-389)||(4710-4864)
scaffold0653 (32-69)||(4988-5025)
[»] chr8 (10 HSPs)
chr8 (305-389)||(13645700-13645784)
chr8 (305-389)||(13746125-13746209)
chr8 (311-389)||(18566211-18566289)
chr8 (311-389)||(5826706-5826784)
chr8 (313-389)||(23432550-23432626)
chr8 (320-389)||(241166-241235)
chr8 (320-389)||(794521-794590)
chr8 (315-389)||(5829311-5829385)
chr8 (348-389)||(211049-211090)
chr8 (348-389)||(724672-724713)
[»] chr2 (11 HSPs)
chr2 (310-389)||(26654312-26654391)
chr2 (310-389)||(26652769-26652848)
chr2 (311-386)||(16151849-16151924)
chr2 (311-389)||(24216391-24216469)
chr2 (310-377)||(21547874-21547941)
chr2 (343-389)||(8686072-8686118)
chr2 (327-377)||(22311203-22311253)
chr2 (343-389)||(25348484-25348530)
chr2 (304-377)||(21585052-21585125)
chr2 (310-377)||(18848762-18848829)
chr2 (343-376)||(17417097-17417130)
[»] chr4 (6 HSPs)
chr4 (315-389)||(8912073-8912147)
chr4 (311-389)||(22316331-22316409)
chr4 (314-389)||(12333717-12333792)
chr4 (311-389)||(16321822-16321900)
chr4 (327-389)||(22222328-22222391)
chr4 (343-377)||(20245766-20245800)
[»] chr6 (13 HSPs)
chr6 (306-387)||(19134122-19134203)
chr6 (311-389)||(10482474-10482552)
chr6 (310-389)||(225841-225920)
chr6 (310-389)||(239458-239537)
chr6 (306-389)||(27124713-27124796)
chr6 (311-389)||(21686654-21686732)
chr6 (311-389)||(14201699-14201777)
chr6 (348-389)||(19731922-19731963)
chr6 (311-389)||(7775101-7775178)
chr6 (327-373)||(18614925-18614970)
chr6 (343-377)||(26239017-26239051)
chr6 (343-389)||(28952275-28952321)
chr6 (352-389)||(1637048-1637085)
[»] chr5 (6 HSPs)
chr5 (311-389)||(9824677-9824754)
chr5 (311-388)||(28760859-28760936)
chr5 (304-377)||(24492048-24492121)
chr5 (343-389)||(25570152-25570198)
chr5 (305-389)||(21215297-21215381)
chr5 (311-389)||(24884857-24884935)
[»] chr3 (9 HSPs)
chr3 (311-388)||(13340391-13340468)
chr3 (311-388)||(13177491-13177568)
chr3 (323-389)||(11360465-11360531)
chr3 (343-388)||(9323981-9324026)
chr3 (349-389)||(15330957-15330997)
chr3 (343-386)||(21318777-21318820)
chr3 (305-377)||(14426867-14426939)
chr3 (327-377)||(16198651-16198701)
chr3 (327-373)||(46349433-46349479)
[»] scaffold0002 (1 HSPs)
scaffold0002 (311-388)||(129420-129497)
[»] scaffold0300 (2 HSPs)
scaffold0300 (343-389)||(12480-12526)
scaffold0300 (312-389)||(7761-7838)
[»] scaffold0041 (1 HSPs)
scaffold0041 (311-389)||(26893-26971)
[»] scaffold0520 (1 HSPs)
scaffold0520 (343-389)||(7629-7675)
[»] chr1 (4 HSPs)
chr1 (343-389)||(9985227-9985273)
chr1 (305-389)||(24005853-24005935)
chr1 (310-377)||(15650715-15650782)
chr1 (327-377)||(15787406-15787456)
[»] scaffold0711 (1 HSPs)
scaffold0711 (355-389)||(1309-1343)
[»] scaffold0053 (1 HSPs)
scaffold0053 (312-377)||(28326-28391)


Alignment Details
Target: chr7 (Bit Score: 393; Significance: 0; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 426 - 926
Target Start/End: Original strand, 9263399 - 9263905
Alignment:
426 ctttcttcttcttcctcatgggtgattcttcttgatcaaataagtctgcaagatgaattgtgtttaacttgtaaagtttaagaaactaa---ttgaaaaa 522  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||   ||||||||    
9263399 ctttcttcttcttcctcatgggtgattcttcttgatcaaataagtctgcaagatgaattgtggttaacttgtaaagtttaagaaactaaaaattgaaaaa 9263498  T
523 cagaatatgacttggcactccccaatgcagcttcgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagca 622  Q
    |||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |    
9263499 cagaatatgacttggcacttaccaatgcagctccgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgacgaagcgagcggtagaa 9263598  T
623 tccctggatgctttccaccgtgagaggagttgtggttggaggagctggtggtggttgctgtcccacaacaatatgaatttcattgttcaatgatgccatc 722  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |||||||||| |||||||||||||||||||||||||||    
9263599 tccctggatgctttccaccgtgagaggagttgtggttggaggagctgctggtggtggctgttccacaacaatctgaatttcattgttcaatgatgccatc 9263698  T
723 ttgctcagtttctctgtgga-atttttgttgttgttgaaggaaatggaactgaagtgcagtgcttgcaatgcaagtgtttttgtttccaaattgagagtt 821  Q
    ||||| ||||||||||| ||  ||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||     
9263699 ttgcttagtttctctgttgattttttttttgttgttaaaggaaatggaactgaagtgcagtgcgtgcaatgcaagtgtttttgtttccaaattgagagtc 9263798  T
822 tatttatacggtgctcctaatgatgtaagcaaagcgcgtgttagcctctttggatg-aatc-aacattgatggaagagatactcataaccttgaaaccta 919  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||    
9263799 tatttatatagtgctcctaatgatgtaagcaaagcgcgtgttagcctctttggatgaaatcaaacattgatggaagagatactcataaccttgaaaccta 9263898  T
920 tgaaaca 926  Q
    |||||||    
9263899 tgaaaca 9263905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 426 - 926
Target Start/End: Original strand, 9267678 - 9268184
Alignment:
426 ctttcttcttcttcctcatgggtgattcttcttgatcaaataagtctgcaagatgaattgtgt-ttaacttgtaaagtttaagaaactaa---ttgaaaa 521  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||   |||||||    
9267678 ctttcttctacttcctcatgggtgattcttcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattgaaaa 9267777  T
522 acagaatatgacttggcactccccaatgcagcttcgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagc 621  Q
    ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||||    
9267778 acagaatatgacttggcactcaccaatgcagctccgatgcaaaaacttgtcgctcctttcagcaactctcccccaatgctccgacgaagcgagcggtagc 9267877  T
622 atccctggatgctttccaccgtgagaggagttgtggttggaggagctggtggtggttgctgtcccacaacaatatgaatttcattgttcaatgatgccat 721  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
9267878 atccctggatgctttccaccgtgacaggagttgtggttggaggagctggtggtggttgctgttccacaacaacatgaatttcattgttcaatgatgccat 9267977  T
722 cttgctcagtttctctgtggaatttttgttgttgttgaaggaaatggaactgaagtgcagtgcttgcaatgcaagtgtttttgtttccaaattgagagtt 821  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||     
9267978 cttgctcagtttctctgttgaatttttgttgttgttgaaggaaatggaactgaagtgctgtgcgtgcaaagcaagtgtttttgtttccaaattgagagtc 9268077  T
822 tatttatacggtgctcctaatgatgtaagcaaagcgcgtgttagcctctttggatg-aatc-aacattgatggaagagatactcataaccttgaaaccta 919  Q
    ||||| || ||||||||||||||||||||||||||| | || |||||||||||||| |||| |||| ||||||||||||||||| |||||||||||||||    
9268078 tatttgtagggtgctcctaatgatgtaagcaaagcgtgcgtgagcctctttggatgaaatcaaacactgatggaagagatactcttaaccttgaaaccta 9268177  T
920 tgaaaca 926  Q
    |||||||    
9268178 tgaaaca 9268184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 431 - 862
Target Start/End: Complemental strand, 9263221 - 9262786
Alignment:
431 ttcttcttcctcatgggtgattcttcttgatcaaataagtctgcaagatgaattgtgt-ttaacttgtaaagtttaagaaactaa---ttgaaaaacaga 526  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||   || |||||||||    
9263221 ttcttcttcctcatgggtgattcttcttgatcaaataagtctgcaagatgaattgtgagttaacttgtaaagtttaagaaactaaaaattaaaaaacaga 9263122  T
527 atatgacttggcactccccaatgcagcttcgatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagcatccc 626  Q
    |||||| ||||||||| |||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||    
9263121 atatgaattggcactcaccaatgtagctcggatgaaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgacaaagcgagcggtagcatccc 9263022  T
627 tggatgctttccaccgtgagaggagttgtggttggaggagctggtggtggttgctgtcccacaacaatatgaatttcattgttcaatgatgccatcttgc 726  Q
    ||||| |||| |||||||||||||||||||||||||||||||| | ||||| ||||| |||||||||| |||||||||||||||||||||| ||||||||    
9263021 tggattcttttcaccgtgagaggagttgtggttggaggagctgctagtggtggctgttccacaacaatctgaatttcattgttcaatgatgtcatcttgc 9262922  T
727 tcagtttctctgtggaatttttgttgttgttgaaggaaatggaactgaagtgcagtgcttgcaatgcaagtgtttttgtttccaaattgagagtttattt 826  Q
    ||| ||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
9262921 tcaatttctctgttgaattttttttgttgttaaaggaaatggaactgaagtgcagtgcgtgcaatgcaagtgtttttgtttccaaattgagagtctattt 9262822  T
827 atacggtgctcctaatgatgtaagcaaagcgcgtgt 862  Q
    |||  |||||||||||||||||||||||||||||||    
9262821 atatagtgctcctaatgatgtaagcaaagcgcgtgt 9262786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 227; E-Value: 1e-124
Query Start/End: Original strand, 557 - 862
Target Start/End: Complemental strand, 9267625 - 9267319
Alignment:
557 gatgcaaaaacttgtcgctcctttcagcaactctaccgcaatgctccgatgaagcgagcggtagcatccctggatgctttccaccgtgagaggagttgtg 656  Q
    ||||||||||||||||||||||||||| |||||| |||||||||| |||  |||||||||||||||||||||||||||||||||| ||||||||||||||    
9267625 gatgcaaaaacttgtcgctcctttcagtaactcttccgcaatgcttcgactaagcgagcggtagcatccctggatgctttccaccttgagaggagttgtg 9267526  T
657 gttggaggagctggtggtggttgctgtcccacaacaatatgaatttcattgttcaatgatgccatcttgctcagtttctctgtgga-atttttgttgttg 755  Q
    ||||||||||||| ||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||  ||||| ||||||    
9267525 gttggaggagctgctggtggtggctgttccacaacaatctgaatttcattgttcaatgatgccatcttgctcagtttctctgttgattttttttttgttg 9267426  T
756 ttgaaggaaatggaactgaagtgcagtgcttgcaatgcaagtgtttttgtttccaaattgagagtttatttatacggtgctcctaatgatgtaagcaaag 855  Q
    || |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||    
9267425 ttaaaggaaatggaactgaagtgcagtgcgtgcaatgcaagtgtttttgtttccaaattgagagtctatttatatagtgctcctaatgatgtaagcaaag 9267326  T
856 cgcgtgt 862  Q
    |||||||    
9267325 cgcgtgt 9267319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 235 - 389
Target Start/End: Original strand, 9244898 - 9245052
Alignment:
235 tggttggagccttctagggtggcttctaaatatgttagggcatgtattcttttcttctctgatggattgtttgtcggaacaagagtggttcatacaattc 334  Q
    |||||||||||||||| ||||||||||||||||||  ||| | ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||    
9244898 tggttggagccttctacggtggcttctaaatatgtcggggtaggtattattttcttctctgatggattgtttttcggaacaagagttgttcatacaattc 9244997  T
335 atctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||| |||| ||||||||||| |||||||||| |||||||||| || |||||    
9244998 atctaggattttgatgataacaaactattgaagaataattggaatattagcatat 9245052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 98; E-Value: 1e-47
Query Start/End: Original strand, 244 - 389
Target Start/End: Original strand, 9260930 - 9261075
Alignment:
244 ccttctagggtggcttctaaatatgttagggcatgtattcttttcttctctgatggattgtttgtcggaacaagagtggttcatacaattcatctaggct 343  Q
    ||||||| ||||||||||||||||||  ||| | ||||| ||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |    
9260930 ccttctacggtggcttctaaatatgtcggggtaggtattattttcttctctgatggattgtttttcggaacaacagttgttcatacaattcatctaggat 9261029  T
344 tttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||| |||||||||||||||||||||| |||||||||||||||||||    
9261030 tttgatgataacaaagtattgaagaataattggaatactaacatat 9261075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 8 - 113
Target Start/End: Original strand, 9244713 - 9244818
Alignment:
8 aaagttatcagtctttctcatataaacaacaactttggatatggcttatttgtttagaatcaaacctattacgttggatcactggttttcacggtctaac 107  Q
    |||||||| ||||||| |||  | |||||||||||||||||||||||||||||||||||||| || || ||  |||| ||| |||||| |||||||||||    
9244713 aaagttatgagtctttttcacttgaacaacaactttggatatggcttatttgtttagaatcagacatactaaattgggtcattggtttgcacggtctaac 9244812  T
108 atgcct 113  Q
    | ||||    
9244813 aagcct 9244818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 19142365 - 19142444
Alignment:
310 ggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||||| ||||||| | ||||| |||||| |||| |||||||||||||||| ||||||||||| |||||||||||||    
19142365 ggaacaagaatggttcaaataattcctctaggattttgatgataacaaagtattaaagaacaattgaaatactaacatat 19142444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 20741764 - 20741843
Alignment:
310 ggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||||| ||||||| | ||||| |||||| |||| |||||||||||||||| ||||||||||| |||||||||||||    
20741764 ggaacaagaatggttcaaataattcctctaggattttgatgataacaaagtattaaagaacaattgaaatactaacatat 20741843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 32 - 114
Target Start/End: Original strand, 9248953 - 9249035
Alignment:
32 aacaacaactttggatatggcttatttgtttagaatcaaacctattacgttggatcactggttttcacggtctaacatgcctc 114  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||  |||| ||| || ||| |||||||||||| |||||    
9248953 aacaccaactttggatatggcttatttgtttagaatcaaacctactaaattgggtcattgttttgcacggtctaacaagcctc 9249035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 20053678 - 20053632
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||    
20053678 ttttgatgataacaaagtattgaagaacaattggaatactaacatat 20053632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 312 - 389
Target Start/End: Original strand, 232224 - 232300
Alignment:
312 aacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||| |||||||||||| || | || | |||| ||||||||||| ||||||||||||||||||||||||||||||    
232224 aacaagaatggttcatacaagtc-tataaggttttgatgataacaaaatattgaagaacaattggaatactaacatat 232300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 389
Target Start/End: Complemental strand, 4876759 - 4876719
Alignment:
349 tgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||||||||||||||||||||||||||||||||||||    
4876759 tgataacaaagtattgaagaacaattggaatactaacatat 4876719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 311 - 390
Target Start/End: Complemental strand, 17916062 - 17915983
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatata 390  Q
    |||||||| |||||||||||| |  |||  | |||| ||||||| |||||||||||||||||| ||||||||||||||||    
17916062 gaacaagaatggttcatacaagttctcttagattttgatgataataaagtattgaagaacaataggaatactaacatata 17915983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 19842132 - 19842178
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| |||||||||||||||||||||||||||| |||||||||||||    
19842132 ttttgatgataacaaagtattgaagaacaattgcaatactaacatat 19842178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 312 - 389
Target Start/End: Complemental strand, 17919202 - 17919125
Alignment:
312 aacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||| |||||||||||| ||||||||  |||  ||||||| ||| ||||||||||||||| ||||| ||||||||    
17919202 aacaagaatggttcatacaagtcatctagaatttcgatgataaaaaaatattgaagaacaattagaatattaacatat 17919125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 886 - 926
Target Start/End: Complemental strand, 9223490 - 9223450
Alignment:
886 ttgatggaagagatactcataaccttgaaacctatgaaaca 926  Q
    |||||||||||||||||| ||||||||||||||||||||||    
9223490 ttgatggaagagatactcttaaccttgaaacctatgaaaca 9223450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 864 - 926
Target Start/End: Original strand, 9275909 - 9275973
Alignment:
864 agcctctttggatgaa-tcaa-cattgatggaagagatactcataaccttgaaacctatgaaaca 926  Q
    |||||||||||||||| |||| || | ||||||||||||||| ||||||||||||||||||||||    
9275909 agcctctttggatgaaatcaaacaataatggaagagatactcttaaccttgaaacctatgaaaca 9275973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 864 - 926
Target Start/End: Original strand, 9282590 - 9282654
Alignment:
864 agcctctttggatgaa-tcaa-cattgatggaagagatactcataaccttgaaacctatgaaaca 926  Q
    |||||||||||||||| |||| || | ||||||||||||||| ||||||||||||||||||||||    
9282590 agcctctttggatgaaatcaaacaataatggaagagatactcttaaccttgaaacctatgaaaca 9282654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 864 - 926
Target Start/End: Original strand, 9293561 - 9293625
Alignment:
864 agcctctttggatgaa-tcaa-cattgatggaagagatactcataaccttgaaacctatgaaaca 926  Q
    |||||||||||||||| |||| || | ||||||||||||||| ||||||||||||||||||||||    
9293561 agcctctttggatgaaatcaaacaataatggaagagatactcttaaccttgaaacctatgaaaca 9293625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 8807891 - 8807819
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatacta 383  Q
    |||||||| |||||||||||| || |||||| |||| |||  || ||||||||||||||| ||| ||||||||    
8807891 gaacaagaatggttcatacaagtcctctagggttttgatgtaaaaaaagtattgaagaacgattagaatacta 8807819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 401 - 436
Target Start/End: Original strand, 9267633 - 9267668
Alignment:
401 tacatgattatgctcccaactctaactttcttcttc 436  Q
    ||||| ||||||||||||||||||||||||||||||    
9267633 tacataattatgctcccaactctaactttcttcttc 9267668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 304 - 374
Target Start/End: Complemental strand, 8106131 - 8106061
Alignment:
304 tttgtcggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaatt 374  Q
    ||||| ||||||| | |||||  |||||||| |||||| |||| |||||||||||||||| ||||| ||||    
8106131 tttgttggaacaaaattggtttgtacaattcctctagggttttgatgataacaaagtattaaagaataatt 8106061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 10983391 - 10983437
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||||||||||||||||||||||| | ||| ||||||||    
10983391 ttttgatgataacaaagtattgaagaacaattagtataataacatat 10983437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653 (Bit Score: 99; Significance: 3e-48; HSPs: 2)
Name: scaffold0653
Description:

Target: scaffold0653; HSP #1
Raw Score: 99; E-Value: 3e-48
Query Start/End: Original strand, 235 - 389
Target Start/End: Complemental strand, 4864 - 4710
Alignment:
235 tggttggagccttctagggtggcttctaaatatgttagggcatgtattcttttcttctctgatggattgtttgtcggaacaagagtggttcatacaattc 334  Q
    |||||||||||||||| ||||||||||||||||||  ||| | ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||||    
4864 tggttggagccttctacggtggcttctaaatatgtcggggtaggtattattttcttctctgatggattgtttttcggaacaagagttgttcatacaattc 4765  T
335 atctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||| |||| ||||||||||| |||||||||| |||||||||| || |||||    
4764 atctaggattttgatgataacaaactattgaagaataattggaatattagcatat 4710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0653; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 32 - 69
Target Start/End: Complemental strand, 5025 - 4988
Alignment:
32 aacaacaactttggatatggcttatttgtttagaatca 69  Q
    ||||||||||||||||||||||||||||||||||||||    
5025 aacaacaactttggatatggcttatttgtttagaatca 4988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 3e-23; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 13645784 - 13645700
Alignment:
305 ttgtcggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||    
13645784 ttgttggaacaagaatggttcatacaattcctctaggattttgatgataacaaagtattgaataacaattggtatactaacatat 13645700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 13746209 - 13746125
Alignment:
305 ttgtcggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||||| ||||||||||||||| |||||| |||| ||||||||||||||||||| ||||||||| ||||||||||||    
13746209 ttgttggaacaagaatggttcatacaattcctctaggattttgatgataacaaagtattgaataacaattggtatactaacatat 13746125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 18566289 - 18566211
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||| |||||||||||| || | |||| |||| ||||||||||||||||||||||||||||||||||||||||||    
18566289 gaacaagaatggttcatacaagtcctttagggttttgatgataacaaagtattgaagaacaattggaatactaacatat 18566211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 5826784 - 5826706
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||| |||||||||||| |  |||| | |||| ||||||||||||||||| ||||||||||||||| ||||||||    
5826784 gaacaagaatggttcatacaagttttctaaggttttgatgataacaaagtattgcagaacaattggaatattaacatat 5826706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 313 - 389
Target Start/End: Original strand, 23432550 - 23432626
Alignment:
313 acaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||| | |||||||||| || |||| | |||| ||||||| ||||||| ||||||||||||||||||||||||||    
23432550 acaagaatcgttcatacaagtcctctaaggttttgatgataataaagtatcgaagaacaattggaatactaacatat 23432626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 241235 - 241166
Alignment:
320 tggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||||||| |  ||| || |||| ||||||||||| | ||||||||||||||||||||||||||||    
241235 tggttcatacaagttctcttggattttgatgataacaaactgttgaagaacaattggaatactaacatat 241166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 794590 - 794521
Alignment:
320 tggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||||||| |  ||| || |||| ||||||||||| | ||||||||||||||||||||||||||||    
794590 tggttcatacaagttctcttggattttgatgataacaaactgttgaagaacaattggaatactaacatat 794521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 5829385 - 5829311
Alignment:
315 aagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| |||||||||||| |  |||| | |||| ||||||||||||||||| |||||||||||||||  |||||||    
5829385 aagaatggttcatacaagttctctaaggttttgatgataacaaagtattgcagaacaattggaatataaacatat 5829311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 211049 - 211090
Alignment:
348 atgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
211049 atgataacaaactgttgaagaacaattggaatactaacatat 211090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 348 - 389
Target Start/End: Original strand, 724672 - 724713
Alignment:
348 atgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||||||| | ||||||||||||||||||||||||||||    
724672 atgataacaaactgttgaagaacaattggaatactaacatat 724713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 26654312 - 26654391
Alignment:
310 ggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||||||||||||||||||||| |||  | |||| ||||||||||||||||||||||||||||||| ||||||||||    
26654312 ggaacaagagtggttcatacaattcctctgaggttttgatgataacaaagtattgaagaacaattggaagactaacatat 26654391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 26652769 - 26652848
Alignment:
310 ggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| |||| ||||||||||||||  |||| |  ||| ||||||||||||||||||||||||||||||||||||||||||    
26652769 ggaaaaagaatggttcatacaattactctaaggatttgatgataacaaagtattgaagaacaattggaatactaacatat 26652848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 386
Target Start/End: Original strand, 16151849 - 16151924
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaaca 386  Q
    |||||||| ||||| ||| || || |||||| |||| ||||||||| |||||||||||||||||||||||||||||    
16151849 gaacaagaatggtttatagaagtcctctagggttttgatgataacagagtattgaagaacaattggaatactaaca 16151924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 24216469 - 24216391
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||| |||||||||||| | |||| || |||| ||||||||| |||||||||||||||||||| ||| |||||||    
24216469 gaacaagaatggttcatacaagttatcttgggttttgatgataacagagtattgaagaacaattggattacgaacatat 24216391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 377
Target Start/End: Original strand, 21547874 - 21547941
Alignment:
310 ggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga 377  Q
    ||||||| |||||||  |||||||| |||| | |||| |||||| |||||||||||||||||||||||    
21547874 ggaacaaaagtggtttgtacaattcctctaaggttttgatgataccaaagtattgaagaacaattgga 21547941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 8686118 - 8686072
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||| ||||||| ||||||||||||||||||||||||||    
8686118 ttttgatgataataaagtatcgaagaacaattggaatactaacatat 8686072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 22311203 - 22311253
Alignment:
327 tacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga 377  Q
    |||||||| |||| | |||| ||||||||||||||||||||||||||||||    
22311203 tacaattcctctaaggttttgatgataacaaagtattgaagaacaattgga 22311253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 25348530 - 25348484
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||||||||||||||||||||||||  ||||||||||||    
25348530 ttttgatgataacaaagtattgaagaacaattgatatactaacatat 25348484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 377
Target Start/End: Complemental strand, 21585125 - 21585052
Alignment:
304 tttgtcggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga 377  Q
    ||||| ||||||| |||||||  |||||||| |||| | |||| | ||||||||||||||||||||| ||||||    
21585125 tttgttggaacaaaagtggtttgtacaattcctctaaggttttgaggataacaaagtattgaagaacgattgga 21585052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 377
Target Start/End: Complemental strand, 18848829 - 18848762
Alignment:
310 ggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga 377  Q
    ||||||| | |||||  |||||||  |||||  |||| ||||||||||||||||||||||||||||||    
18848829 ggaacaaaattggtttgtacaatttctctagagtttttatgataacaaagtattgaagaacaattgga 18848762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 343 - 376
Target Start/End: Original strand, 17417097 - 17417130
Alignment:
343 ttttcatgataacaaagtattgaagaacaattgg 376  Q
    |||| |||||||||||||||||||||||||||||    
17417097 ttttgatgataacaaagtattgaagaacaattgg 17417130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 5e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 315 - 389
Target Start/End: Complemental strand, 8912147 - 8912073
Alignment:
315 aagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||||||||||| |||||| |||| |||||||||||| |||||||||||||||||||||||||||||    
8912147 aagaatggttcatacaattcctctaggattttgatgataacaaagcattgaagaacaattggaatactaacatat 8912073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 5e-22
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 22316331 - 22316409
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||| |||||| ||||| || |||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
22316331 gaacaagaatggttcgtacaagtcctctaggattttgatgataacaaagtattgaagaacaattggaatactaacatat 22316409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 314 - 389
Target Start/End: Original strand, 12333717 - 12333792
Alignment:
314 caagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||||||||||| ||||| |||||| |||| ||||||||||| |||||||||||||||||| |||||||||||    
12333717 caagagtggttcataaaattcctctagggttttgatgataacaaaatattgaagaacaattggattactaacatat 12333792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 16321822 - 16321900
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||| |||||||||||| |  |||||| |||| ||||||||||||||||||||||||||| ||||||||||||||    
16321822 gaacaagaatggttcatacaagttctctagggttttgatgataacaaagtattgaagaacaatttgaatactaacatat 16321900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 327 - 389
Target Start/End: Original strand, 22222328 - 22222391
Alignment:
327 tacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga-atactaacatat 389  Q
    |||||||| |||| | |||| ||||||||||||||||||||||||| |||| ||||||| ||||    
22222328 tacaattcctctaaggttttgatgataacaaagtattgaagaacaagtggacatactaatatat 22222391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 20245800 - 20245766
Alignment:
343 ttttcatgataacaaagtattgaagaacaattgga 377  Q
    |||| ||||||||||||||||||||||||||||||    
20245800 ttttgatgataacaaagtattgaagaacaattgga 20245766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 2e-21; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 306 - 387
Target Start/End: Complemental strand, 19134203 - 19134122
Alignment:
306 tgtcggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacat 387  Q
    |||| |||||||| || |||||||||||| |||||| |||| |||||| |||||||||||||||||||||||||||||||||    
19134203 tgtcagaacaagaatgattcatacaattcctctaggattttgatgatatcaaagtattgaagaacaattggaatactaacat 19134122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 10482552 - 10482474
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||| ||||||||||||||| |||| | |||| | ||||||||||||||||| ||||||||||||||||||||||    
10482552 gaacaagaatggttcatacaattcctctaagattttgaagataacaaagtattgaaaaacaattggaatactaacatat 10482474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 310 - 389
Target Start/End: Complemental strand, 225920 - 225841
Alignment:
310 ggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||||||||||||||||||||| |||||| |||| || ||||||||||||| ||||| ||||| ||| |||||||||    
225920 ggaacaagagtggttcatacaattcctctagggttttgataataacaaagtatttaagaagaattgaaatcctaacatat 225841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 310 - 389
Target Start/End: Original strand, 239458 - 239537
Alignment:
310 ggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||||||||||||||||||||  | |||  |||| |||||||||||||||| ||||| |||||||||||||||||||    
239458 ggaacaagagtggttcatacaatttctttagagttttgatgataacaaagtatttaagaaaaattggaatactaacatat 239537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 306 - 389
Target Start/End: Complemental strand, 27124796 - 27124713
Alignment:
306 tgtcggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| |||||||| |||||||||||| |  ||| || |||| ||||||||||||||||||||||||||||| ||||||||||||    
27124796 tgtcagaacaagaatggttcatacaagttctcttgggttttgatgataacaaagtattgaagaacaattggtatactaacatat 27124713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 21686654 - 21686732
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||| ||||||||| || |  ||| || |||| ||||| ||||||||||||||||||||||||||||||||||||    
21686654 gaacaagaatggttcatagaagttctcttgggtttttatgatgacaaagtattgaagaacaattggaatactaacatat 21686732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 14201777 - 14201699
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||| | |||||||||||| | || | || |||| |||||||||||||||| ||| |||||||||||||||||||||    
14201777 gaacaaaaatggttcatacaagttattttgggttttgatgataacaaagtattaaagtacaattggaatactaacatat 14201699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 348 - 389
Target Start/End: Complemental strand, 19731963 - 19731922
Alignment:
348 atgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||||||||||||| |||||||||||||||||||||||    
19731963 atgataacaaagtattgatgaacaattggaatactaacatat 19731922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 7775101 - 7775178
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||| |||||||||||| |  ||| || |||| |||||||||||||||||||||| ||||| |||||||| ||||    
7775101 gaacaagaatggttcatacaagttctctggg-ttttgatgataacaaagtattgaagaataattgaaatactaatatat 7775178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 373
Target Start/End: Original strand, 18614925 - 18614970
Alignment:
327 tacaattcatctaggcttttcatgataacaaagtattgaagaacaat 373  Q
    |||||||| |||||| |||| ||||||||||||||||||||||||||    
18614925 tacaattcctctagg-ttttgatgataacaaagtattgaagaacaat 18614970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 377
Target Start/End: Complemental strand, 26239051 - 26239017
Alignment:
343 ttttcatgataacaaagtattgaagaacaattgga 377  Q
    |||| ||||||||||||||||||||||||||||||    
26239051 ttttgatgataacaaagtattgaagaacaattgga 26239017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 28952275 - 28952321
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||| |||||||||||||||||||||| ||||| |||||    
28952275 ttttgatgataataaagtattgaagaacaattggattactaccatat 28952321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 352 - 389
Target Start/End: Complemental strand, 1637085 - 1637048
Alignment:
352 taacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||||||||||||||||||| | ||||||||||||    
1637085 taacaaagtattgaagaacaatttgtatactaacatat 1637048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 1e-19; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 9824754 - 9824677
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||| | ||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| |||||||||||||    
9824754 gaacaaaaatggttcatacaattcctctagg-ttttgatgataacaaagtattgaagaacaattgaaatactaacatat 9824677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 311 - 388
Target Start/End: Complemental strand, 28760936 - 28760859
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacata 388  Q
    |||||||| |||||||||||| |  ||| || |||| ||||||||||||||||||||||||||||| |||||||||||    
28760936 gaacaagaatggttcatacaaattctcttggattttgatgataacaaagtattgaagaacaattggtatactaacata 28760859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 304 - 377
Target Start/End: Original strand, 24492048 - 24492121
Alignment:
304 tttgtcggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga 377  Q
    ||||| ||||||| |||||||  |||||||| |||| | |||| ||||||||||||||||||||||||||||||    
24492048 tttgttggaacaaaagtggtttgtacaattcctctaaggttttgatgataacaaagtattgaagaacaattgga 24492121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 25570198 - 25570152
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| |||||||||||||||||||||||||||||| |||||||||||    
25570198 ttttgatgataacaaagtattgaagaacaattggattactaacatat 25570152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 305 - 389
Target Start/End: Original strand, 21215297 - 21215381
Alignment:
305 ttgtcggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||||| ||||||||||||||  | | || |||| |||||||||||||||||||||  |||| |||||| |||||||    
21215297 ttgttggaacaagaatggttcatacaatttctgttggattttgatgataacaaagtattgaagagtaattagaatacgaacatat 21215381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 389
Target Start/End: Original strand, 24884857 - 24884935
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||| |||||||||||| |  | | || |||| |||||||||||||||| ||||| |||||  ||||||||||||    
24884857 gaacaagaatggttcatacaagttcttttggattttgatgataacaaagtattaaagaataattgatatactaacatat 24884935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 5e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 13340391 - 13340468
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacata 388  Q
    |||||| | |||||||||||| || |||| | |||| |||||||||||||||||||||||||||||||||||||||||    
13340391 gaacaacaatggttcatacaagtcctctaaggttttgatgataacaaagtattgaagaacaattggaatactaacata 13340468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 311 - 388
Target Start/End: Original strand, 13177491 - 13177568
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacata 388  Q
    |||||| | |||||||||||| || |||| | |||| ||||||| |||||||||||||||||||||||||||||||||    
13177491 gaacaacaatggttcatacaagtcctctaaggttttgatgataaaaaagtattgaagaacaattggaatactaacata 13177568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 323 - 389
Target Start/End: Original strand, 11360465 - 11360531
Alignment:
323 ttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||| || || |||||| |||| ||||| ||||||||||||||||||||||||||||||||||||    
11360465 ttcatagaagtcctctaggattttgatgatgacaaagtattgaagaacaattggaatactaacatat 11360531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 343 - 388
Target Start/End: Complemental strand, 9324026 - 9323981
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacata 388  Q
    |||| |||||||||||||||||||||||||||||||||||||||||    
9324026 ttttgatgataacaaagtattgaagaacaattggaatactaacata 9323981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 349 - 389
Target Start/End: Original strand, 15330957 - 15330997
Alignment:
349 tgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||||||||||||||||||||||||||||||||||||    
15330957 tgataacaaagtattgaagaacaattggaatactaacatat 15330997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 343 - 386
Target Start/End: Complemental strand, 21318820 - 21318777
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaaca 386  Q
    |||| ||||||| |||||||||||||||||||||||||||||||    
21318820 ttttgatgataataaagtattgaagaacaattggaatactaaca 21318777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 305 - 377
Target Start/End: Original strand, 14426867 - 14426939
Alignment:
305 ttgtcggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga 377  Q
    |||| ||||||| | |||||  |||||||| |||| | |||| |||||||||||||||| |||||||||||||    
14426867 ttgttggaacaaaattggtttgtacaattcctctaagattttgatgataacaaagtattaaagaacaattgga 14426939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 16198651 - 16198701
Alignment:
327 tacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga 377  Q
    ||||||||||||| | ||||  ||||||||||||||||||||| |||||||    
16198651 tacaattcatctaaggttttgttgataacaaagtattgaagaataattgga 16198701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 373
Target Start/End: Complemental strand, 46349479 - 46349433
Alignment:
327 tacaattcatctaggcttttcatgataacaaagtattgaagaacaat 373  Q
    |||||||| |||| | |||| ||||||||||||||||||||||||||    
46349479 tacaattcttctaagattttgatgataacaaagtattgaagaacaat 46349433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 46; Significance: 1e-16; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 311 - 388
Target Start/End: Complemental strand, 129497 - 129420
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacata 388  Q
    |||||| | |||||||||||| || |||| | |||| ||||||| |||||||||||||||||||||||||||||||||    
129497 gaacaacaatggttcatacaagtcctctaaggttttgatgataaaaaagtattgaagaacaattggaatactaacata 129420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 12526 - 12480
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||||||||||||||||||||||||| ||||||||||||    
12526 ttttgatgataacaaagtattgaagaacaattggtatactaacatat 12480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300; HSP #2
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 312 - 389
Target Start/End: Complemental strand, 7838 - 7761
Alignment:
312 aacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||| |||||||||||| |  ||| || |||| || |||||||||||||||| ||||||||| ||||||||||||    
7838 aacaagaatggttcatacaagttctcttgggttttgatcataacaaagtattgaaaaacaattggtatactaacatat 7761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 39; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 389
Target Start/End: Complemental strand, 26971 - 26893
Alignment:
311 gaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||||||| || |||||| ||||  | |||| |||  ||||||||||||||| ||||||||||||||||||||||||||    
26971 gaacaagaatgattcatataatttttatagggtttcgatgataacaaagtatcgaagaacaattggaatactaacatat 26893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0520 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Original strand, 7629 - 7675
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| |||||||||||||||| ||||||||||||| |||||||||||    
7629 ttttgatgataacaaagtattcaagaacaattggattactaacatat 7675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 343 - 389
Target Start/End: Complemental strand, 9985273 - 9985227
Alignment:
343 ttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||||    
9985273 ttttgatgataacaaattattgaagaacaattgaaatactaacatat 9985227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 305 - 389
Target Start/End: Original strand, 24005853 - 24005935
Alignment:
305 ttgtcggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattggaatactaacatat 389  Q
    |||| ||||||||||||||  ||||||||| |||||| |||| |||||||||| ||| |||||| |  || ||||||||||||||    
24005853 ttgttggaacaagagtggt--atacaattcctctagggttttgatgataacaacgtactgaagatcttttagaatactaacatat 24005935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 310 - 377
Target Start/End: Original strand, 15650715 - 15650782
Alignment:
310 ggaacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga 377  Q
    ||||||| | |||||  |||||||| |||| | |||| ||||||| ||||||||||||||||||||||    
15650715 ggaacaaaattggtttgtacaattcctctaaggttttgatgataataaagtattgaagaacaattgga 15650782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 377
Target Start/End: Original strand, 15787406 - 15787456
Alignment:
327 tacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga 377  Q
    |||||||| |||| | |||| |||||||||||||||||| |||||||||||    
15787406 tacaattcctctaaggttttgatgataacaaagtattgacgaacaattgga 15787456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 355 - 389
Target Start/End: Original strand, 1309 - 1343
Alignment:
355 caaagtattgaagaacaattggaatactaacatat 389  Q
    ||||||||| |||||||||||||||||||||||||    
1309 caaagtattaaagaacaattggaatactaacatat 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 28391 - 28326
Alignment:
312 aacaagagtggttcatacaattcatctaggcttttcatgataacaaagtattgaagaacaattgga 377  Q
    ||||| |||||||  |||||||| |||| | |||| ||||||||||| ||||||||| ||||||||    
28391 aacaaaagtggtttgtacaattcctctaaggttttgatgataacaaaatattgaagatcaattgga 28326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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