View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718-Insertion-2 (Length: 880)
Name: NF5718-Insertion-2
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718-Insertion-2 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 763; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 763; E-Value: 0
Query Start/End: Original strand, 10 - 880
Target Start/End: Original strand, 39763834 - 39764701
Alignment:
| Q |
10 |
ttcacccttcaataccgcaacatatttgtctaaccttttaagctccttgttaagttcattttcttttttcgatgacagtgacacacttttttcaagcttc |
109 |
Q |
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||||||||||||| || | ||||||| ||||||||||||||| ||||| |||| ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39763834 |
ttcacccttcaatgccactacatattcgtctaaccttttaagttccttcttaaattctagttcttttttcgatgacagtgacacacttttttcaagcttc |
39763933 |
T |
|
| Q |
110 |
aaattcaacctctcattctcattcacaataccttgcaactcattttccttatccatcagttcctctttcaactcctcaatttcggctttctttctttcca |
209 |
Q |
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| T |
39763934 |
aaattcaacctctcattctcattcacaataccttgcaactcattttccttatccatcagtttctctttcaactcctcaatttcggctttctttctttcca |
39764033 |
T |
|
| Q |
210 |
attcggactccctctgactcaattctgattttacccgttcgatcaattcataggcattcctaatcttcaccgtgttctgaatctgttcttcttggaattt |
309 |
Q |
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| T |
39764034 |
attcggactccctctgactcaattctgattttacccgttcgatcaactcataggcattcctaatcttcaccgtgttctgaatctgttcttcttggaattt |
39764133 |
T |
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| Q |
310 |
aatttcggcaatcccaatcgcagacctaagtagttcaacctcagacctcaaagaacgaaactcgatttcaatgtgattagtactatcattcttttccaat |
409 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39764134 |
aatttcggcaatctcaatcgcagacctaagtagttcaacctcagacctcaaagaacgaaactcgatttcaatgtgattagtactatcattcttttccaat |
39764233 |
T |
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| Q |
410 |
ctttcagattccatttccaaatttctgtcatgtgcaaggctggactcaagtttgcttacatgcacagattttgcagcatcagctcttaacagctcgacag |
509 |
Q |
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| T |
39764234 |
ctttcagattccatttccaaatttctgtcatgtgcaaggctggactcaagtttgcttacatgcacagattttgcagcatcagctcttaacagctcgacag |
39764333 |
T |
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| Q |
510 |
ttcttttcgctgcctcaagttgtcgcaaagtctcgttcaccaaaggttgagcctgatttgactctttgcaatcttggagctggttttccatgtttttcac |
609 |
Q |
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| T |
39764334 |
ttcttttcgctgcctcaagttgtcgcaaagtctcgttcaccaaaggttgagcctgatttgactctttgcaatctcggagctggttttccatgtttttcac |
39764433 |
T |
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| Q |
610 |
aagagaaagtgattttgataacttgtgcctcaagttttgtagttctgtgtctggtgattctgctatttgagtacgtgctttctcactatcaactatcaat |
709 |
Q |
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| T |
39764434 |
aagagaaagtgattttgataacttgtgcctcaagttttgtagttctgtgtctggtgattctgctatttgagtacgtgctttctcactattaactatcaat |
39764533 |
T |
|
| Q |
710 |
tcatgtattctgctgcttctagggcgttttctctaaagcaacacaatcaatcataaatggattagaattctgaacaaatttcagaattttggattattgt |
809 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
39764534 |
tcatgtattctgctgcttctagggcgttttctctaaagcaaca----caatcataaatggattagaattctgaacaaatttcaagaatttggattattgt |
39764629 |
T |
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| Q |
810 |
tacagaatcc-tttaaacttatatgaaaaactttgatatctaaatcataatttgaagaaattttggagttgg |
880 |
Q |
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| T |
39764630 |
tacagagtccttttaaacttaaatgaaaaactttgatatctaaatcataatttgaataaattttggagttgg |
39764701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 61 - 450
Target Start/End: Original strand, 39758149 - 39758538
Alignment:
| Q |
61 |
aagttcattttcttttttcgatgacagtgacacacttttttcaagcttcaaattcaacctctcattctcattcacaataccttgcaactcattttcctta |
160 |
Q |
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| T |
39758149 |
aagttcattttcttttttcgatgccaacgacatgctcttttcaagcttcaaattcaacgtctcattctcatccacaatgccttgcaattcattttcctta |
39758248 |
T |
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| Q |
161 |
tccatcagttcctctttcaactcctcaatttcggctttctttctttccaattcggactccctctgactcaattctgattttacccgttcgatcaattcat |
260 |
Q |
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||||||| || ||| |||||||||||||||| || ||||||||| ||||||||||| ||||||||| || |||||||||| | || ||| ||||| || | |
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| T |
39758249 |
tccatcaatttctccttcaactcctcaattttggatttctttctatccaattcggattccctctgattcgattctgatttcatcctttcaatcaactcgt |
39758348 |
T |
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| Q |
261 |
aggcattcctaatcttcaccgtgttctgaatctgttcttcttggaatttaatttcggcaatcccaatcgcagacctaagtagttcaacctcagacctcaa |
360 |
Q |
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| T |
39758349 |
aagcattcattatcttcattgtgttctgaatcttttcctcctgtaatttagtttcaccaatctcaattgcagacctaagtagttcaacctcaaacctcaa |
39758448 |
T |
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| Q |
361 |
agaacgaaactcgatttcaatgtgattagtactatcattcttttccaatctttcagattccatttccaaatttctgtcatgtgcaaggct |
450 |
Q |
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|||| |||||||||||||||||||||| |||||||||||||||||||||||||||| ||| ||||||||||| | ||||||||| |||| |
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| T |
39758449 |
agaatgaaactcgatttcaatgtgattcgtactatcattcttttccaatctttcagcttcaatttccaaattaccatcatgtgcacggct |
39758538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 8 - 66
Target Start/End: Original strand, 39754837 - 39754895
Alignment:
| Q |
8 |
aattcacccttcaataccgcaacatatttgtctaaccttttaagctccttgttaagttc |
66 |
Q |
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| T |
39754837 |
aattcacccttcaataccgccacatatttgtccaaccttttaagctccttgttaagttc |
39754895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 508 - 578
Target Start/End: Original strand, 39758632 - 39758702
Alignment:
| Q |
508 |
agttcttttcgctgcctcaagttgtcgcaaagtctcgttcaccaaaggttgagcctgatttgactctttgc |
578 |
Q |
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| T |
39758632 |
agttctttccgcggcctcgagttgtcgcaaagtctcattcaccaaaggtcgagcctgaactgactctttgc |
39758702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 9e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 331 - 409
Target Start/End: Original strand, 36927272 - 36927350
Alignment:
| Q |
331 |
agacctaagtagttcaacctcagacctcaaagaacgaaactcgatttcaatgtgattagtactatcattcttttccaat |
409 |
Q |
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|||||| |||||||||| ||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | ||||||| |
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| T |
36927272 |
agacctcagtagttcaaactcggacttcaaagaacgaaactcgatttaaatgtgattagtactatcattttcttccaat |
36927350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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