View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718-Insertion-3 (Length: 532)
Name: NF5718-Insertion-3
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718-Insertion-3 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 120 - 532
Target Start/End: Original strand, 40206595 - 40207002
Alignment:
| Q |
120 |
ctcttcattattgagtgatactaggagcgtggacttctcgtgatatggttgggacggtggacatatatcactatttttcttaagcaacatagcactatta |
219 |
Q |
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| T |
40206595 |
ctcttcattattgagtgatactaggagcgtggacttctcgtgatatggttgggacggtggacatatatcactatttttcttaagcaacatagcactatta |
40206694 |
T |
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| Q |
220 |
tattatcacattttttaatacaaaaatgattctattctattatatggttggttatgtctctttctatctctagaagaaaaaggttacatattttagtcaa |
319 |
Q |
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| T |
40206695 |
tattatcacattttttaatacaaaaatgattc-----tattatatggttggttatgtctctttctatctctagaagaaaaaggttacatattttagtcaa |
40206789 |
T |
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| Q |
320 |
aagagtttctgcaaaaccacgtggccctctatctcactaccacttcttttgcctctataaatatatacacccacctcactactcctcacaacaattcatc |
419 |
Q |
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| T |
40206790 |
aagagtttctgcaaaaccacgtggccctctatctcactaccacttcttttgcctctataaatatatacacccacctcactactcctcacaacaattcatc |
40206889 |
T |
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| Q |
420 |
ttcaaaacaattcattcatctaaaaaaccaaacatctttctctccctcaaacattctttcttattctcctttttacacttgttcatattccttctcaagc |
519 |
Q |
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| T |
40206890 |
ttcaaaacaattcattcatctaaaaaaccaaacatctttctctccctcaaacattctttcttattctcctttttacacttgttcatattccttctcaacc |
40206989 |
T |
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| Q |
520 |
acatcaaaaaaca |
532 |
Q |
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| T |
40206990 |
acctcaaaaaaca |
40207002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 7 - 77
Target Start/End: Original strand, 40206482 - 40206552
Alignment:
| Q |
7 |
agaatccacctgaattcccacgcgagattaaaccctgtgggagacactttccacaaattggtcttacaatt |
77 |
Q |
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| T |
40206482 |
agaatccacctgaattcccacgcgagattaaaccctgttggagacactttccacaaattggtcttacaatt |
40206552 |
T |
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