View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5718-Insertion-4 (Length: 387)
Name: NF5718-Insertion-4
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718-Insertion-4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 42 - 369
Target Start/End: Complemental strand, 5252455 - 5252125
Alignment:
| Q |
42 |
tatgcctaaaatagttataccaatgtgtttaatattttatattaaagagaggggaaaaaaccttcctccccaacaagctaagtcacgtatttatatatct |
141 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5252455 |
tatgcctaaaatagttataccaatgtgtttaatattttatattaaagagaggggaaaaaaccttcctccccaacaagctaagtcacgtatttatatatct |
5252356 |
T |
|
| Q |
142 |
tgtcttgaattgaatatgacactatatatgatagtgaaggtgaagaatgtattgtcatgtctatgaatgatttatattttacaaacacttcaaggaaatc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5252355 |
tgtcttgaattgaatatgacactatatatgatagtgaaggtgaagaatgtattgtcatgtctatgaatgatttatattttacaaacacttcaaggaaatc |
5252256 |
T |
|
| Q |
242 |
ttccagaagtatgggttgaaagatag---atatatagaaaaagggttggatagtgaagcacgattatgtgaccagaccccaaaatagagaaacaaagtac |
338 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5252255 |
ttccagaagtatgggttgaaagatagatcatatatagaaaaagggttggatagtgaagcacgattatgtgaccagaccccaaaatagagaaacaaagtac |
5252156 |
T |
|
| Q |
339 |
aatcaaacagcaacttcaagtactcattcat |
369 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
5252155 |
aatcaaacagcaacttcaagtactcattcat |
5252125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University