View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718-Insertion-5 (Length: 361)
Name: NF5718-Insertion-5
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 6 - 347
Target Start/End: Original strand, 7474789 - 7475130
Alignment:
| Q |
6 |
caagttctacttatgaaaatcaggtacaacttgcgaagtgcttctaatgaaaacgtgccatgttcttgatcaggcacgttggttacaaacatgaatgtta |
105 |
Q |
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| T |
7474789 |
caagttctacttatgaaaatcaggtacaacttacgaagtgcttctaatgaaaacgtgcaatgttcttgatcaggcatgttggttacaaacatgaatgtta |
7474888 |
T |
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| Q |
106 |
caggaaattgcttgagttatatgagta--tgtttgtttttccttatagcttttggggctaccttcacatgccaaagttgactaattagattacttgtcca |
203 |
Q |
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| T |
7474889 |
caggaaattgctcgagttatatgagtacatgtttgtttttccttatagcttttggggctaccttcacatgccaaagttgactaattagattacttgtcca |
7474988 |
T |
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| Q |
204 |
acaaagcatatactctgtctaatgtggagagatgaatggcatcatttacatgcttcattatgctgcatagttttatggtctagttttcctatttaatata |
303 |
Q |
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| T |
7474989 |
acaaagcatatact--gtctaatgtggagagatgaatggcatcatttacatgcttcattatgctgcatagttttatggtctagttttcctatttaatata |
7475086 |
T |
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| Q |
304 |
tatctgaaaggtacttgtctaattgtcaaccgtcattcatccag |
347 |
Q |
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| T |
7475087 |
tatctgaaaggtacttgtctaattgtcaaccgtcattcatccag |
7475130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 6 - 75
Target Start/End: Original strand, 30959475 - 30959544
Alignment:
| Q |
6 |
caagttctacttatgaaaatcaggtacaacttgcgaagtgcttctaatgaaaacgtgccatgttcttgat |
75 |
Q |
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| T |
30959475 |
caagttctacttatgacaatcaggtacagcctacaaagtgtttctaatagaaatgtgtcatgttcttgat |
30959544 |
T |
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