View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5718-Insertion-6 (Length: 155)

Name: NF5718-Insertion-6
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5718-Insertion-6
NF5718-Insertion-6
[»] chr1 (6 HSPs)
chr1 (8-137)||(25787276-25787410)
chr1 (17-121)||(16584748-16584847)
chr1 (26-133)||(8084202-8084304)
chr1 (17-96)||(1161337-1161416)
chr1 (17-121)||(11620121-11620218)
chr1 (17-68)||(42009922-42009973)
[»] chr7 (3 HSPs)
chr7 (17-117)||(7352258-7352353)
chr7 (25-90)||(39695289-39695354)
chr7 (17-68)||(46993451-46993502)
[»] chr4 (3 HSPs)
chr4 (17-121)||(28319174-28319273)
chr4 (17-68)||(23107839-23107890)
chr4 (17-68)||(24466247-24466298)
[»] chr5 (3 HSPs)
chr5 (17-90)||(19947911-19947984)
chr5 (17-68)||(31896086-31896137)
chr5 (17-64)||(16746357-16746404)
[»] chr8 (4 HSPs)
chr8 (17-121)||(7956224-7956323)
chr8 (17-116)||(44223215-44223310)
chr8 (17-90)||(35949030-35949101)
chr8 (29-82)||(17722330-17722383)
[»] chr2 (3 HSPs)
chr2 (17-120)||(31111616-31111714)
chr2 (31-137)||(36009384-36009487)
chr2 (21-96)||(13852173-13852248)
[»] scaffold0879 (1 HSPs)
scaffold0879 (17-68)||(512-563)
[»] chr3 (1 HSPs)
chr3 (17-67)||(46655718-46655768)


Alignment Details
Target: chr1 (Bit Score: 110; Significance: 9e-56; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 110; E-Value: 9e-56
Query Start/End: Original strand, 8 - 137
Target Start/End: Original strand, 25787276 - 25787410
Alignment:
Q  8 gtattaagc-ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctct 106  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25787276 gtattaagccttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctct 25787375  T
Q  107 catct----tcatctcatcagtcagactctttcat 137  Q
    |||||    ||||||||||||||||||||||||||    
T  25787376 catctcatctcatctcatcagtcagactctttcat 25787410  T

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Target: chr1; HSP #2
Raw Score: 65; E-Value: 7e-29
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 16584847 - 16584748
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctctcatcttcatc 116  Q
    |||||||||||||| |||||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||     |||||||||||| |||||||||    
T  16584847 ttactaatattatcatacctcacacaaacttatggttagacccaaaattaaacataaaatactttttaatcca-----ttcactttctctaatcttcatc 16584753  T

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Target: chr1; HSP #3
Raw Score: 60; E-Value: 6e-26
Query Start/End: Original strand, 26 - 133
Target Start/End: Original strand, 8084202 - 8084304
Alignment:
Q  26 ttatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctctcatcttcatctcatcagtc 125  Q
    ||||||||||||||||||||| || ||||| | ||||||||||||| ||||||||||||||| |     |||||||||||||||||||||||||| ||||    
T  8084202 ttatcctacctcacacaaactcatggttaggcacaaaattaaacataaaataatttttaatcta-----ttcactttctctcatcttcatctcattagtc 8084296  T
Q  126 agactctt 133  Q
    ||||||||    
T  8084297 agactctt 8084304  T

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Target: chr1; HSP #4
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 1161416 - 1161337
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcactt 96  Q
    ||||||||||||||||||||||||||||||||| |||   ||||||||||||||| ||||| |||||||||||| |||||    
T  1161416 ttactaatattatcctacctcacacaaacttatggttcagcccaaaattaaacataaaatattttttaatccattcactt 1161337  T

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Target: chr1; HSP #5
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 11620121 - 11620218
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctctcatcttcatc 116  Q
    ||||||||||||||||||||||||  ||||||| |||| |||||||||||||||| ||||| ||||||||     || ||||||||||| ||||||||||    
T  11620121 ttactaatattatcctacctcaca--aacttatggttaaacccaaaattaaacatgaaatactttttaat-----caattcactttctcccatcttcatc 11620213  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 42009973 - 42009922
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaa 68  Q
    ||||||||| ||||||||||||||||||||||| ||||| || |||||||||    
T  42009973 ttactaatagtatcctacctcacacaaacttatggttaggcctaaaattaaa 42009922  T

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Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 117
Target Start/End: Complemental strand, 7352353 - 7352258
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctctcatcttcatc 116  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||  ||||||||||     ||||||||||||||||||||||    
T  7352353 ttactaatattatcctacgtcacacaaacttatagttagacccaaaattaaacataaaatacgttttaatcca-----ttcactttctctcatcttcatc 7352259  T

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Target: chr7; HSP #2
Raw Score: 50; E-Value: 6e-20
Query Start/End: Original strand, 25 - 90
Target Start/End: Original strand, 39695289 - 39695354
Alignment:
Q  25 attatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccat 90  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||    
T  39695289 attatcttacctcacacaaacttatggttagacccaaaattaaacataaaataatttttcatccat 39695354  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 46993451 - 46993502
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaa 68  Q
    |||||||||||||| |||||||||||||||||  ||||  ||||||||||||    
T  46993451 ttactaatattatcgtacctcacacaaacttaaggttaagcccaaaattaaa 46993502  T

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Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 28319273 - 28319174
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctctcatcttcatc 116  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| ||||||||     || ||||||||||||||| ||||||    
T  28319273 ttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatattttttaat-----caattcactttctctcattttcatc 28319179  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 23107890 - 23107839
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaa 68  Q
    ||||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  23107890 ttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaa 23107839  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 24466298 - 24466247
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaa 68  Q
    ||||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  24466298 ttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaa 24466247  T

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Target: chr5 (Bit Score: 54; Significance: 2e-22; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 19947911 - 19947984
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccat 90  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| | ||| ||||||||||||    
T  19947911 ttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataagatactttttaatccat 19947984  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 17 - 68
Target Start/End: Original strand, 31896086 - 31896137
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaa 68  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||    
T  31896086 ttactaatattatcctacctcacacaaacttatggttaggcccaaaattaaa 31896137  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 64
Target Start/End: Complemental strand, 16746404 - 16746357
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaat 64  Q
    ||||||||||||||||||||||||||||||||| ||||| ||||||||    
T  16746404 ttactaatattatcctacctcacacaaacttatggttaggcccaaaat 16746357  T

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Target: chr8 (Bit Score: 53; Significance: 9e-22; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 17 - 121
Target Start/End: Complemental strand, 7956323 - 7956224
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctctcatcttcatc 116  Q
    ||||||||||||||||||||||||||||||||| ||||  ||||||||||||||| ||||| |||||||| ||     ||| ||||||||||| ||||||    
T  7956323 ttactaatattatcctacctcacacaaacttatggttatgcccaaaattaaacataaaatattttttaataca-----ttctctttctctcatattcatc 7956229  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 17 - 116
Target Start/End: Complemental strand, 44223310 - 44223215
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaata-atttttaatccatgcacttcactttctctcatcttcat 115  Q
    |||| |||||||||||||||||||||||||||| ||||| ||||||||||||||| |||||  |||||||||||     |||||||||||||||||||||    
T  44223310 ttacaaatattatcctacctcacacaaacttatggttaggcccaaaattaaacataaaatacttttttaatcca-----ttcactttctctcatcttcat 44223216  T

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Target: chr8; HSP #3
Raw Score: 47; E-Value: 4e-18
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 35949030 - 35949101
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccat 90  Q
    ||||||||||||||||||||||||  ||||||| ||||| ||||||||||||||| ||||| ||||||||||||    
T  35949030 ttactaatattatcctacctcaca--aacttatggttaggcccaaaattaaacataaaatactttttaatccat 35949101  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 17722383 - 17722330
Alignment:
Q  29 tcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttt 82  Q
    |||||||||||||| ||| || ||||| ||||||||||||||| ||||||||||    
T  17722383 tcctacctcacacatactcatggttaggcccaaaattaaacataaaataatttt 17722330  T

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Target: chr2 (Bit Score: 52; Significance: 4e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 31111616 - 31111714
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctctcatcttcatc 116  Q
    |||||||||||||||||||||||||||| |||| ||||| | |||||||||| || ||||| |||||||| ||     ||||||||||||||||||||||    
T  31111616 ttactaatattatcctacctcacacaaaattatggttaggcgcaaaattaaatataaaatactttttaattca-----ttcactttctctcatcttcatc 31111710  T

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Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 31 - 137
Target Start/End: Original strand, 36009384 - 36009487
Alignment:
Q  31 ctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcacttcactttctctcatctt--catctcatcagtcaga 128  Q
    |||||| ||||||| | || |||||  |||||||||||||| |||||||||||||||||     ||||||||||||||||||  |||||||||| ||| |    
T  36009384 ctaccttacacaaattcatggttaggtccaaaattaaacataaaataatttttaatcca-----ttcactttctctcatcttcacatctcatcattcata 36009478  T
Q  129 ctctttcat 137  Q
    |||||||||    
T  36009479 ctctttcat 36009487  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 21 - 96
Target Start/End: Complemental strand, 13852248 - 13852173
Alignment:
Q  21 taatattatcctacctcacacaaacttattgttagacccaaaattaaacattaaataatttttaatccatgcactt 96  Q
    |||||||||| |||||||||||||||||  ||||   |||||||||||||| ||||| |||||||||||| |||||    
T  13852248 taatattatcttacctcacacaaacttaaggttatgaccaaaattaaacataaaatattttttaatccattcactt 13852173  T

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Target: scaffold0879 (Bit Score: 40; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0879
Description:

Target: scaffold0879; HSP #1
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 68
Target Start/End: Complemental strand, 563 - 512
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaaa 68  Q
    ||||||||||||||||||||||||||||||||| ||||| | ||||||||||    
T  563 ttactaatattatcctacctcacacaaacttatggttaggctcaaaattaaa 512  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 67
Target Start/End: Original strand, 46655718 - 46655768
Alignment:
Q  17 ttactaatattatcctacctcacacaaacttattgttagacccaaaattaa 67  Q
    |||||||||||||||||||||||||||| |||| ||||| |||||||||||    
T  46655718 ttactaatattatcctacctcacacaaatttatggttaggcccaaaattaa 46655768  T

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