View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5718_high_14 (Length: 297)
Name: NF5718_high_14
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_high_14 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 33 - 265
Target Start/End: Complemental strand, 54116121 - 54115889
Alignment:
| Q |
33 |
gccacttcatttgtggttcatcaacatttttggatggatactcctaatagatcactcctagaattctgtcatcaaccagtcaattatcaaagaaagtaag |
132 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54116121 |
gccacttcattagtggttcatcaacatttttggatggatactcctaatagatcactcctagaattctgtcatcaaccagtcaattatcaaagaaagtaag |
54116022 |
T |
|
| Q |
133 |
aattatagcagcctgcaacttcaatttttcccaacaagtgctcaaatcctgcataaacaaacaacttaatgtcatataaatttaatgcctaaaacgaagt |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54116021 |
aattatagcagcctgcaacttcaatttttcccaacaagtgctcaaatcctgcataaacaaacaacttaatgtcatataaatttaatgcctaaaacgaagt |
54115922 |
T |
|
| Q |
233 |
atggctgtttatttaaccaggttttatagctaa |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
54115921 |
atggctgtttatttaaccaggttttatagctaa |
54115889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 122 - 220
Target Start/End: Original strand, 23277164 - 23277261
Alignment:
| Q |
122 |
aagaaagtaagaattatagcagcctgcaacttcaatttttcccaacaagtgctcaaatcctgcataaacaaacaacttaatgtcatataaatttaatgc |
220 |
Q |
| |
|
||||||||||||| |||||||||||| |||||| ||| | ||| ||||| |||||||||||||||||||||| | |||||||||||| |||||||| |
|
|
| T |
23277164 |
aagaaagtaagaactatagcagcctgaaacttcgattctaccccacaagaactcaaatcctgcataaacaaacca-aaaatgtcatataattttaatgc |
23277261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University