View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718_high_22 (Length: 229)
Name: NF5718_high_22
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 123; Significance: 2e-63; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 88 - 210
Target Start/End: Complemental strand, 7722723 - 7722601
Alignment:
| Q |
88 |
atgatgggttggtcaaaagagcccacgtgactagagggaacggtcttcaagggatctatctatctgcaaggtttttctccgatcacgaggctttattagt |
187 |
Q |
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| T |
7722723 |
atgatgggttggtcaaaagagcccacgtgactagagggaacggtcttcaagggatctatctatctgcaaggtttttctccgatcacgaggctttattagt |
7722624 |
T |
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| Q |
188 |
gtctcaaaaacctctgtccgtat |
210 |
Q |
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||||||||||||||||||||||| |
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| T |
7722623 |
gtctcaaaaacctctgtccgtat |
7722601 |
T |
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Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 4 - 67
Target Start/End: Complemental strand, 7722812 - 7722749
Alignment:
| Q |
4 |
ataatgcatagtttcaatttatactagtagaaagatcataaagataaagaaagagaaagagagg |
67 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7722812 |
ataatgcatagtttcaatttatactagtagaaagatcataaagataaagaaagagaaagagagg |
7722749 |
T |
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