View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5718_high_23 (Length: 219)
Name: NF5718_high_23
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_high_23 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 24 - 187
Target Start/End: Complemental strand, 10612655 - 10612492
Alignment:
| Q |
24 |
cagttgttctttgaaagtcactaaactgtcatgctacattgaacaaaatattgctcgcctagtaaagttgctctttcttttctccctgaaactcctcgct |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
10612655 |
cagttgttctttgaaagtcactaaactgtcatactacattggacaaaatattgctcgcctagtgaagttgctatttcttttctccctgaaactccttgct |
10612556 |
T |
|
| Q |
124 |
tgcagctcgtaagagaaatcaatttgcccataaacacttggaactctctgactttgctcgcctt |
187 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10612555 |
tgcagctcgtacgagaaatcaatttgcccataaacacttggaactctctgactttgctcgcctt |
10612492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University