View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718_low_1 (Length: 775)
Name: NF5718_low_1
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 656; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 656; E-Value: 0
Query Start/End: Original strand, 18 - 767
Target Start/End: Complemental strand, 7474796 - 7474050
Alignment:
| Q |
18 |
agaacttggggcagaaggagctgtgccaacttgtttgacgacgtcttggtacgaaggtgggtaagaaggtgcactccgctcaaaactagcaacatgagga |
117 |
Q |
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| T |
7474796 |
agaacttggggcagaaggagctgcgccaacttgtttgacgacgtcttggtacgaaggtgggtaagaaggtgcactccgctcaaaactagcagcatgagga |
7474697 |
T |
|
| Q |
118 |
gaagattttgaagggccaaaagatgccgaaccataaggttttgaagtaccaaaagacgcggaaccataagacggtgttgggagggcaactctatttggag |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7474696 |
gaaggttttgaagggccaaaagatgccgaaccataaggttttgaagtaccaaaagacgcggaaccataagacggtgttgggagggcaactctatttggag |
7474597 |
T |
|
| Q |
218 |
cattggccttccgactactgtttaagataaataagcaaaaatatcgacaaannnnnnngtcagaaatgaacttgagannnnnnnnaagaaaagagataat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||| ||| | |
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| T |
7474596 |
cattggccttccgactactgtttaagataaataagcacaaatatcgacaaattttt--gtcagaaatgaacttgagatttttttgaagaaaaga-atagt |
7474500 |
T |
|
| Q |
318 |
aatactgaaggcaacaaatcaaaattttacccaagtagattaagctctattgcggccttatactgagaaggaatttccatcaatgctgcgagagcaaatg |
417 |
Q |
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| T |
7474499 |
aatactgaaggcaacaaatcaaaattttacccaagtagattaagctctattgcggccttatactgagaaggaatttccatcaatgctgcgagagcaaatg |
7474400 |
T |
|
| Q |
418 |
ctgcctcttttcgtgaaggaggaatgttcttcgacataagttccgtgaaattcacaaactaaacaacaaagagaattccacaataattcagatgatgaat |
517 |
Q |
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| T |
7474399 |
ctgcctcttttcgtgaaggaggaatgttcttcgacataagttccgtgaaattcacaaactaaagcacaaagagaattccacaataattcagatgatgaat |
7474300 |
T |
|
| Q |
518 |
tccaaaattttagaacattttaacaagcattatttaatcagatattttgcatgctcttcgttgtttacctgaaaattatcgaaggccctggctggcatat |
617 |
Q |
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| T |
7474299 |
tccaaaattttagaacattttaataagcattatttaatcagatattttgcatgctcttcgttgtttacctgaaaattatcgaaggccctggctggcatat |
7474200 |
T |
|
| Q |
618 |
tgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaatatgatcgaaagaggaaatttactgtgacaaagtagataagtaagaca |
717 |
Q |
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| T |
7474199 |
tgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaatatgatcgaaagaggaaatttactgtgacaaagtagataagtaagaca |
7474100 |
T |
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| Q |
718 |
agatgttcgtaaaaacagaaaactattgagaataaccttgcagtataatc |
767 |
Q |
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| T |
7474099 |
agatgttcgtaaaaacagaaaactattgagaataaccttgcagcataatc |
7474050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 88; Significance: 7e-42; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 353 - 480
Target Start/End: Original strand, 11688808 - 11688935
Alignment:
| Q |
353 |
tagattaagctctattgcggccttatactgagaaggaatttccatcaatgctgcgagagcaaatgctgcctcttttcgtgaaggaggaatgttcttcgac |
452 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||| | ||||| ||| |
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| T |
11688808 |
tagattaagctctattgctgccttatactgagaaggaatttccatcaatgctgcaagtgcaaatgctgcttcttttcgtgaaggaggtgtattctttgac |
11688907 |
T |
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| Q |
453 |
ataagttccgtgaaattcacaaactaaa |
480 |
Q |
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|||| |||||||||||||||||||||| |
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| T |
11688908 |
ataatctccgtgaaattcacaaactaaa |
11688935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 583 - 730
Target Start/End: Complemental strand, 30959053 - 30958898
Alignment:
| Q |
583 |
tacctgaaaattatcgaaggccctg-gctggcatattgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaatatgatcgaaag |
681 |
Q |
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||||||||||||||| |||||||| | ||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |
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| T |
30959053 |
tacctgaaaattatcaaaggcccttagttggaatattgtcacaaaactccttcatcttgtcccaaggtccatctccaacaccaaccaatatgattgatag |
30958954 |
T |
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| Q |
682 |
aggaaatttactgtg---acaaagt----agataagtaagacaagatgttcgtaaa |
730 |
Q |
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||||||||||||||| ||||||| |||||| |||||||||||||| ||||| |
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| T |
30958953 |
aggaaatttactgtggcaacaaagtaggcagataaataagacaagatgtttgtaaa |
30958898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 614 - 701
Target Start/End: Complemental strand, 30955183 - 30955096
Alignment:
| Q |
614 |
atattgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaatatgatcgaaagaggaaatttactgtgacaaa |
701 |
Q |
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|||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |
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| T |
30955183 |
atattgtcctgaaactccttcaccatgtcccaaggtccatctccaacaccaaccaatatgattgaaagaggaaattttctgtgacaaa |
30955096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 374 - 480
Target Start/End: Complemental strand, 30959238 - 30959132
Alignment:
| Q |
374 |
cttatactgagaaggaatttccatcaatgctgcgagagcaaatgctgcctcttttcgtgaaggaggaatgttcttcgacataagttccgtgaaattcaca |
473 |
Q |
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||||||||||||||| |||| ||| |||||| ||||||||||||||||||||||||||| | ||| |||||| || ||||| | ||||| |||||||||| |
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| T |
30959238 |
cttatactgagaagggattttcatgaatgcttcgagagcaaatgctgcctcttttcgtgtaagagaaatgttgtttgacatgatttccgcgaaattcaca |
30959139 |
T |
|
| Q |
474 |
aactaaa |
480 |
Q |
| |
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||||||| |
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| T |
30959138 |
aactaaa |
30959132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 584 - 695
Target Start/End: Original strand, 11689036 - 11689147
Alignment:
| Q |
584 |
acctgaaaattatcgaaggccctggctggcatattgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaatatgatcgaaagag |
683 |
Q |
| |
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||||| |||||||||||||| | | ||| ||||| || ||||| || |||||||||||||| |||||||||||||||||||||||||| || ||||||| |
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| T |
11689036 |
acctggaaattatcgaaggcacgagatggaatattatcgtcaaattctttcatcatgtcccatggtccatctccaacaccaaccaatataattgaaagag |
11689135 |
T |
|
| Q |
684 |
gaaatttactgt |
695 |
Q |
| |
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||| ||||||| |
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| T |
11689136 |
gaagcttactgt |
11689147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 334 - 395
Target Start/End: Complemental strand, 30955774 - 30955713
Alignment:
| Q |
334 |
aatcaaaattttacccaagtagattaagctctattgcggccttatactgagaaggaatttcc |
395 |
Q |
| |
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|||||||||||||||| |||||| ||||||| ||||||||||||||||| || |||||||| |
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| T |
30955774 |
aatcaaaattttaccctagtagaccaagctcttttgcggccttatactgaaaaagaatttcc |
30955713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 584 - 669
Target Start/End: Original strand, 37318288 - 37318373
Alignment:
| Q |
584 |
acctgaaaattatcgaaggccctggctggcatattgtcatcaaactccttcatcatgtcccaaggtccatctccaacaccaaccaa |
669 |
Q |
| |
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||||||||||| |||||||| | ||||| ||||| || ||||| ||| ||||||| ||||| |||||||||||||| |||||||| |
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| T |
37318288 |
acctgaaaattgtcgaaggctcgagctggaatattatcgtcaaattccctcatcatatcccacggtccatctccaactccaaccaa |
37318373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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