View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718_low_10 (Length: 350)
Name: NF5718_low_10
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 83 - 346
Target Start/End: Original strand, 235421 - 235685
Alignment:
| Q |
83 |
tttatcaaccacataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaac |
182 |
Q |
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| T |
235421 |
tttatcaaccacataaggctggcctttgaaaacacggatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaac |
235520 |
T |
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| Q |
183 |
actactggttcttctccagtacagttcaatgagccgacaatgataggg-ttttttccatgggacatgacagcgaccacttttttaggattgaagtggctg |
281 |
Q |
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| T |
235521 |
actactggttcttctccagtacagttcaacgagccgacaatgatagggtttttttccatgggacatgacagcgaccactattttaggattgaagtggctg |
235620 |
T |
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| Q |
282 |
acgacatggccatcgagtgaggatggtggtcttattgtttctctgtcttcgggtgtgatgatgtc |
346 |
Q |
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| T |
235621 |
acgacatggccatcgggtgaggacggtggtcttattgtttctctgtcttcgggtgtgatgatgtc |
235685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 8814265 - 8814023
Alignment:
| Q |
1 |
taatatccccaccaccaaccaaagatacagcaactaaccggacagtggaatcatcaggacaaacagtaacagtccgcccagttttatcaaccacataagg |
100 |
Q |
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| T |
8814265 |
taatatccccgccagcaagcaaagattcagccactaactgaacagttgagtcatccggtccaacagtaacagtctgtccagttttgtctaccacataaca |
8814166 |
T |
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| Q |
101 |
ctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaacactac---tggttcttct |
197 |
Q |
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| T |
8814165 |
ctgacctttgaaagcacggatatctccaaagtagactgacatttcaggaataaacttccaattctcatcgccgcatttgaacactaccagttgttcttct |
8814066 |
T |
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| Q |
198 |
ccagtacagttcaatgagccgacaatgatagggttttttccat |
240 |
Q |
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| T |
8814065 |
cctttacagttaaatgaggcgacgatgataggtttatttccat |
8814023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 247068 - 247267
Alignment:
| Q |
1 |
taatatccccaccaccaaccaaagatacagcaactaaccggacagtggaatca---tcaggacaaacagtaacagtccgcccagttttatcaaccacata |
97 |
Q |
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||||||| |||||||||||||||||| |||||||||||||||||||||||||| || || | || ||| |||| |||||||| || ||| |||| |
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| T |
247068 |
taatatctccaccaccaaccaaagattcagcaactaaccggacagtggaatcatcctccggtccaaatccaactgtccatccagttttgtctaccgcata |
247167 |
T |
|
| Q |
98 |
aggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaacactactggttcttct |
197 |
Q |
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||| ||||||||||||||| ||||||||||||||| ||||||| ||| ||| |||||||||||||| || |||||||||| | |||||| |||| |
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| T |
247168 |
aggtcggcctttgaaaacacaaatgtctcctaaataaaccgacatgtgaggtatagccttccaattctcatcaccgcatttcaacaatgctggttgttct |
247267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 251309 - 251114
Alignment:
| Q |
1 |
taatatccccaccaccaaccaaagatacagcaactaaccggacagtggaatcatcaggacaaa------cagtaacagtccgcccagttttatcaaccac |
94 |
Q |
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||||||| |||||||||||||||||| ||| |||||| ||||||||||||| ||||| | || ||||||| ||||| ||||| || || ||| | |
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| T |
251309 |
taatatctccaccaccaaccaaagattgagccactaactggacagtggaatcctcaggtccaagttcaacagtaactgtccgtccagtattgtctaccgc |
251210 |
T |
|
| Q |
95 |
ataaggctggcctttgaaaacacgaatgtctcctaaataggccgacattccaggaataagtttccaattctcatcgccacatttcaacactactgg |
190 |
Q |
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| T |
251209 |
ataaggtcggcctttgaaaacacaaatgtctccaaaataagccgacatgttaggtatagccttccaattctcatcaccgcatttgaacactactgg |
251114 |
T |
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