View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5718_low_11 (Length: 348)

Name: NF5718_low_11
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5718_low_11
NF5718_low_11
[»] chr7 (9 HSPs)
chr7 (53-344)||(22884689-22884962)
chr7 (66-344)||(22887303-22887575)
chr7 (167-344)||(22803435-22803612)
chr7 (167-344)||(22869933-22870110)
chr7 (204-339)||(22829175-22829310)
chr7 (167-229)||(22807203-22807265)
chr7 (296-339)||(22874163-22874206)
chr7 (66-99)||(22803342-22803375)
chr7 (272-309)||(22807278-22807315)
[»] chr1 (2 HSPs)
chr1 (282-337)||(21152387-21152442)
chr1 (59-149)||(21152509-21152594)


Alignment Details
Target: chr7 (Bit Score: 175; Significance: 4e-94; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 53 - 344
Target Start/End: Original strand, 22884689 - 22884962
Alignment:
Q  53 ctattcgaaagtcatcactgcattcgttggtatcgtatgaagtcgtccataatagtgatgtgattatgatctgttcaattttagggctcattctatttct 152  Q
    ||||| |||||||||||||||||| ||||||||| |||||||| |||||| ||      |||||||||||||||||||||||||||||||||||||||||    
T  22884689 ctatttgaaagtcatcactgcatttgttggtatcatatgaagttgtccatgat-----ggtgattatgatctgttcaattttagggctcattctatttct 22884783  T
Q  153 atgcatcctgataacttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctt 252  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |    
T  22884784 atgcatcctgataacttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagc------------t 22884871  T
Q  253 tagcacaaatagaatttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgattctc 344  Q
    |||||||||||| ||||  |||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  22884872 tagcacaaataggatttttgaagttatttagtggttgccttatcgcatttgaagg-tttgcaggttatttctttgtttaccctttgaatctc 22884962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 66 - 344
Target Start/End: Original strand, 22887303 - 22887575
Alignment:
Q  66 atcactgcattcgttggtatcgtatgaagtcgtccataatagtgatgtgattatgatctgttcaattttagggctcattctatttctatgcatcctgata 165  Q
    ||||| |||||||||||||  |||||||||||||||| ||||||||     |||||| |||||||||||||||||||||||||       ||||| | ||    
T  22887303 atcacagcattcgttggtaaagtatgaagtcgtccatgatagtgat-----tatgatgtgttcaattttagggctcattctata------catcccgtta 22887391  T
Q  166 actta------tatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcaca 259  Q
    |||||      |||| |||||||||||| |||||||||||  | |||||| |||| |||  ||||||||| || |||||||| |  |||||||||| |||    
T  22887392 acttaatcttatatgtgcatatgcagaactactgaagtgttgaagaaaatcgaacgagtaaaggagaaaagatgaagagcttgtttgagtctttagaaca 22887491  T
Q  260 aatagaatttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgattctc 344  Q
    |||| |||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||| ||||    
T  22887492 aatataatttctgaagttatttagtggttgccttattgcatttg-aggttttgcaggttatttcttagtttaccctttgaatctc 22887575  T

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Target: chr7; HSP #3
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 167 - 344
Target Start/End: Original strand, 22803435 - 22803612
Alignment:
Q  167 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaa 266  Q
    |||||||| |||||| | |||||| ||||||||||| ||||||||||| | || ||||||||| || |||||||| ||||||||||||||||||| ||||    
T  22803435 cttatatgtgcatatactgaattattgaagtgtccaagaaaatagaacgactgaaggagaaaagatgaagagcttgtccgagtctttagcacaaacagaa 22803534  T
Q  267 tttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgattctc 344  Q
    |||| |||| |||||||||||||  |||||||||||||| ||||| ||| ||||||||||||||||||||||| ||||    
T  22803535 tttctgaagatatttagtggttggtttattgcatttgaaagtttttcaggttatttctttgtttaccctttgaatctc 22803612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 167 - 344
Target Start/End: Original strand, 22869933 - 22870110
Alignment:
Q  167 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaa 266  Q
    |||||||| |||||| | |||||| ||||||||||| ||||||||||| | || ||||||||| || |||||||| ||||||||||||||||||| ||||    
T  22869933 cttatatgtgcatatactgaattattgaagtgtccaagaaaatagaacgactgaaggagaaaagatgaagagcttgtccgagtctttagcacaaacagaa 22870032  T
Q  267 tttcggaagttatttagtggttgccttattgcatttgaaggttttgcagattatttctttgtttaccctttgattctc 344  Q
    |||| |||| |||||||||||||  |||||||||||||| ||||| ||| ||||||||||||||||||||||| ||||    
T  22870033 tttctgaagatatttagtggttggtttattgcatttgaaagtttttcaggttatttctttgtttaccctttgaatctc 22870110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 204 - 339
Target Start/End: Original strand, 22829175 - 22829310
Alignment:
Q  204 gaaaatagaaccagtgcaggagaaaaaataaagagcttctccgagtctttagcacaaatagaatttcggaagttatttagtggttgccttattgcatttg 303  Q
    |||| |||||| |||| ||||||||| || |||||||| || |||||||||||||||| | |||||| |||||||||||||| |||  ||||||||||||    
T  22829175 gaaattagaacgagtggaggagaaaagatgaagagcttgtctgagtctttagcacaaacataatttctgaagttatttagtgattggtttattgcatttg 22829274  T
Q  304 aaggttttgcagattatttctttgtttaccctttga 339  Q
    |||||||| ||| ||||||||||| |||||||||||    
T  22829275 aaggttttacaggttatttctttgattaccctttga 22829310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 22807203 - 22807265
Alignment:
Q  167 cttatatgggcatatgcagaattactgaagtgtccacgaaaatagaaccagtgcaggagaaaa 229  Q
    |||||||| |||||||||||||||||||||| ||||  |||||| ||| |||| |||||||||    
T  22807203 cttatatgtgcatatgcagaattactgaagtatccaataaaataaaacgagtggaggagaaaa 22807265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 22874163 - 22874206
Alignment:
Q  296 tgcatttgaaggttttgcagattatttctttgtttaccctttga 339  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||    
T  22874163 tgcatttgaaggtttttcaggttatttctttgtttaccccttga 22874206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 99
Target Start/End: Original strand, 22803342 - 22803375
Alignment:
Q  66 atcactgcattcgttggtatcgtatgaagtcgtc 99  Q
    |||| |||||||||||||||||||||||||||||    
T  22803342 atcattgcattcgttggtatcgtatgaagtcgtc 22803375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 309
Target Start/End: Original strand, 22807278 - 22807315
Alignment:
Q  272 gaagttatttagtggttgccttattgcatttgaaggtt 309  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  22807278 gaagttatctagtggttggcttattgcatttgaaggtt 22807315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 282 - 337
Target Start/End: Complemental strand, 21152442 - 21152387
Alignment:
Q  282 agtggttgccttattgcatttgaaggttttgcagattatttctttgtttacccttt 337  Q
    |||||||||||||||||||||||||||||||||| |||||| |||| |||||||||    
T  21152442 agtggttgccttattgcatttgaaggttttgcaggttatttatttggttacccttt 21152387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 59 - 149
Target Start/End: Complemental strand, 21152594 - 21152509
Alignment:
Q  59 gaaagtcatcactgcattcgttggtatcgtatgaagtcgtccataatagtgatgtgattatgatctgttcaattttagggctcattctatt 149  Q
    |||| |||||||||||||||||||||||||||||||||||| || |||     |||||||| || ||||| ||||||||||| ||||||||    
T  21152594 gaaattcatcactgcattcgttggtatcgtatgaagtcgtctatgata-----gtgattatcatgtgttccattttagggcttattctatt 21152509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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