View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718_low_12 (Length: 345)
Name: NF5718_low_12
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 11 - 189
Target Start/End: Complemental strand, 39088743 - 39088565
Alignment:
| Q |
11 |
cacagatgtaaagcatgtggcacatattggattggatggtcctactgaaaatcccccaacctgggtaactctcttaatatattactcaaccttgttaaag |
110 |
Q |
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| T |
39088743 |
cacagatgtaaagcatgtggcacatattggattggatggtcctactgaaaatcccccaacctgggtaactctcttaatatattactcaaccttgttaaag |
39088644 |
T |
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| Q |
111 |
attaattaactacttgaaccaaaaaagattaattagctacttaattattttttgtttctttagtgaacagtaaaaatat |
189 |
Q |
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| T |
39088643 |
attaattaactacttgaaccaaaaaagattaattagctacttaattattttttgtttctttagtgaacagtaaaaatat |
39088565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 242 - 343
Target Start/End: Complemental strand, 39088491 - 39088390
Alignment:
| Q |
242 |
cagatgaacgagtttaaatctaccccaggactttcatcatcagcacctctaaatatgaaccgagatattcattgtaaaagagctgatgattcagaacccc |
341 |
Q |
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| T |
39088491 |
cagatgaacgagtttaaatctaccccaggactttcatcatcagcacctctaaatatgaaccgagatattcattgtaaaagagctgatgattcagaacccc |
39088392 |
T |
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| Q |
342 |
ga |
343 |
Q |
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|| |
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| T |
39088391 |
ga |
39088390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 12 - 42
Target Start/End: Original strand, 15587632 - 15587662
Alignment:
| Q |
12 |
acagatgtaaagcatgtggcacatattggat |
42 |
Q |
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| T |
15587632 |
acagatgtaaagcatgtggcacatattggat |
15587662 |
T |
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