View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718_low_17 (Length: 289)
Name: NF5718_low_17
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 13 - 273
Target Start/End: Original strand, 44837493 - 44837745
Alignment:
| Q |
13 |
atgacggtagtgggaaaggacaaagttgactttttcatgtccaaaataaacaacatcctttgcaaattggaatcaaccaaacttcattcctaatcatcaa |
112 |
Q |
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| T |
44837493 |
atgacggtagtgggaaaggacaaagttgactttttcatgtccaaaataaacaacatcctttgcaaattggaatcaaccaaacttcattcctaatcatcaa |
44837592 |
T |
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| Q |
113 |
atttctaaattgccatttttctcatcctataaataccctaagtacaagaaatcattcacaacataccaaactagaaagaaacactttcacaaaatcacaa |
212 |
Q |
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| T |
44837593 |
atttctaaattgccatttttctcatcctataaataccctaagtacaagaaatcattcacaacataccaaactagaaacaaacactt--------tcacaa |
44837684 |
T |
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| Q |
213 |
agatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgc |
273 |
Q |
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| T |
44837685 |
agatggcaaaaaactctcacacctttttgtctcttattcttctattcctcactctagttgc |
44837745 |
T |
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