View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5718_low_18 (Length: 269)
Name: NF5718_low_18
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_low_18 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 26 - 252
Target Start/End: Complemental strand, 5252712 - 5252485
Alignment:
| Q |
26 |
acaaatgttactctattagttgtattttagnnnnnnn-cattgatcatcagggtttaaatttggatcctttaattgttagctcaaacaagttgatctata |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5252712 |
acaaatgttactctattagttgtattttagttttttttcattgatcatcagggtttaaacttggatcctttaattgttagctcaaacaagttgatctata |
5252613 |
T |
|
| Q |
125 |
tccaacatttaataatctaaataagcatcatttatatgtagtagcaccaagtgaatgacttgatctatgttatatacaataatatgcctaaaattttgct |
224 |
Q |
| |
|
||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |
|
|
| T |
5252612 |
tccaacatttaatcatctatataagcatcatttatatgtagtagcaccaagtgaatgacttgatctgtgttgtatacaataatatgcctaaaattttgct |
5252513 |
T |
|
| Q |
225 |
gaattttggatgtcttaacagattttgg |
252 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
5252512 |
gaattttggatgtcttgacagattttgg |
5252485 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University