View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5718_low_19 (Length: 255)

Name: NF5718_low_19
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5718_low_19
NF5718_low_19
[»] chr2 (4 HSPs)
chr2 (1-240)||(39924095-39924333)
chr2 (101-239)||(32476794-32476931)
chr2 (29-72)||(39903784-39903827)
chr2 (72-134)||(15610395-15610457)
[»] chr4 (3 HSPs)
chr4 (77-189)||(6487986-6488098)
chr4 (176-219)||(6487804-6487847)
chr4 (72-105)||(8514348-8514381)
[»] chr3 (1 HSPs)
chr3 (77-158)||(14743334-14743415)
[»] chr8 (1 HSPs)
chr8 (69-167)||(43691990-43692088)
[»] chr1 (3 HSPs)
chr1 (71-167)||(4923449-4923545)
chr1 (64-116)||(48621914-48621966)
chr1 (77-181)||(51730229-51730333)
[»] chr7 (1 HSPs)
chr7 (74-111)||(7603977-7604014)
[»] chr5 (1 HSPs)
chr5 (89-181)||(5515364-5515456)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39924333 - 39924095
Alignment:
Q  1 aaaaatttatacttttaagtgaactattattagtttcactatgacctgacccaaacttatgaattaattttagggaaaattacactaacctcccttgagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39924333 aaaaatttatacttttaagtgaactattattagtttcactatgacctgacccaaacttatgaattaattttagggaaaattacacta-cctcccttgagg 39924235  T
Q  101 tatgttgaaatgacactcacctcccctctatttttcaaccatacacaattctcccctacttaattttcaatgtgacaaacacatcccttctaactttaca 200  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39924234 tatgttgaaatgacactcacctcccctctatttttcaatcatacacaaatctcccctacttaattttcaatgtgacaaacacatcccttctaactttaca 39924135  T
Q  201 ctgtttgtctccgttaaaacacatcatgtttggtccattt 240  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  39924134 ctgtttgtctccgttaaaacacatcatgtttggtccattt 39924095  T

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Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 32476931 - 32476794
Alignment:
Q  101 tatgttgaaatgacactcacctcccctctatttttcaaccatacacaattctcccctacttaattttcaatgtgacaaacacatcccttctaactttaca 200  Q
    ||||||||||||||||||||  |||||||| |||||||||||||| ||  ||||| |||||||||||||| |||| |||||||||||||||||||| |||    
T  32476931 tatgttgaaatgacactcaca-cccctctacttttcaaccatacataaacctcccatacttaattttcaacgtgataaacacatcccttctaacttaaca 32476833  T
Q  201 ctgtttgtctccgttaaaacacatcatgtttggtccatt 239  Q
    ||  |||||||| |||||||||| | |||||||||||||    
T  32476832 ctaattgtctccattaaaacacagcttgtttggtccatt 32476794  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 39903827 - 39903784
Alignment:
Q  29 attagtttcactatgacctgacccaaacttatgaattaatttta 72  Q
    |||||| |||||||||||||||||||||| |||| |||||||||    
T  39903827 attagtatcactatgacctgacccaaactcatgagttaatttta 39903784  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 134
Target Start/End: Complemental strand, 15610457 - 15610395
Alignment:
Q  72 agggaaaattacactaacctcccttgaggtatgttgaaatgacactcacctcccctctatttt 134  Q
    |||| |||||||| | ||||||| ||| ||||||||||||| |||||||  ||||||||||||    
T  15610457 aggggaaattacaatgacctcccctgatgtatgttgaaatgtcactcacaccccctctatttt 15610395  T

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Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 77 - 189
Target Start/End: Complemental strand, 6488098 - 6487986
Alignment:
Q  77 aaattacactaacctcccttgaggtatgttgaaatgacactcacctcccctctatttttcaaccatacacaattctcccctacttaattttcaatgtgac 176  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||  |  |||||||||||||||||||| |||||    
T  6488098 aaattacactaacctcccttaaggtatgtttaaatgacactcacctcccctctatttttcaaccatgcagtagcctcccctacttaattttcaacgtgac 6487999  T
Q  177 aaacacatccctt 189  Q
    |||||||||||||    
T  6487998 aaacacatccctt 6487986  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 219
Target Start/End: Complemental strand, 6487847 - 6487804
Alignment:
Q  176 caaacacatcccttctaactttacactgtttgtctccgttaaaa 219  Q
    ||||||||||| ||||||||| ||| ||||||||||||||||||    
T  6487847 caaacacatcctttctaacttaacattgtttgtctccgttaaaa 6487804  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 105
Target Start/End: Complemental strand, 8514381 - 8514348
Alignment:
Q  72 agggaaaattacactaacctcccttgaggtatgt 105  Q
    |||||||||||||||||||||||||||| |||||    
T  8514381 agggaaaattacactaacctcccttgagatatgt 8514348  T

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Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 14743334 - 14743415
Alignment:
Q  77 aaattacactaacctcccttgaggtatgttgaaatgacactcacctcccctctatttttcaaccatacacaattctccccta 158  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||    
T  14743334 aaattacactaacctcccttgaggtatgttgaaatgacactcacctaccctctatttttcaaccatacacaaacctccccta 14743415  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 69 - 167
Target Start/End: Original strand, 43691990 - 43692088
Alignment:
Q  69 tttagggaaaattacactaacctcccttgaggtatgttgaaatgacactcacctcccctctatttttcaaccatacacaattctcccctacttaatttt 167  Q
    |||||||||||||||||||||||||| | | || | || |||||||||| ||  ||| ||||||||| ||||| ||||||  |||||||||||| ||||    
T  43691990 tttagggaaaattacactaacctcccctaaagtttatttaaatgacacttacaccccttctattttttaaccaaacacaaacctcccctacttagtttt 43692088  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 4923545 - 4923449
Alignment:
Q  71 tagggaaaattacactaacctcccttgaggtatgttgaaatgacactcacctcccctctatttttcaaccatacacaattctcccctacttaatttt 167  Q
    ||||||||||| ||| ||||||||||||||| |||| ||||| |||||||  |||||| | |||| ||| | |||  |  |||||||||||||||||    
T  4923545 tagggaaaattgcacaaacctcccttgaggtttgttaaaatgtcactcacaccccctcaaatttttaacaagacattaacctcccctacttaatttt 4923449  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 48621966 - 48621914
Alignment:
Q  64 ttaattttagggaaaattacactaacctcccttgaggtatgttgaaatgacac 116  Q
    ||||| ||||||||||||||| | ||||||||| || ||||||||||||||||    
T  48621966 ttaatgttagggaaaattacaatcacctcccttaagatatgttgaaatgacac 48621914  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 181
Target Start/End: Complemental strand, 51730333 - 51730229
Alignment:
Q  77 aaattacactaacctcccttgaggtatgttgaaatgacactcacctcccctctatttttcaaccatacacaattctcccctacttaattttcaatgtgac 176  Q
    ||||||||||  ||||||||||||| |||| || || | |||||  || ||  |||||| ||||| |||||| | |||||| |||||||||||| ||||     
T  51730333 aaattacactctcctcccttgaggtttgttaaactgtcgctcacaccctctacattttttaaccaaacacaactatcccctgcttaattttcaacgtgat 51730234  T
Q  177 aaaca 181  Q
    |||||    
T  51730233 aaaca 51730229  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 111
Target Start/End: Original strand, 7603977 - 7604014
Alignment:
Q  74 ggaaaattacactaacctcccttgaggtatgttgaaat 111  Q
    ||||||||||||||||||||||||||| ||||| ||||    
T  7603977 ggaaaattacactaacctcccttgaggaatgtttaaat 7604014  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 181
Target Start/End: Original strand, 5515364 - 5515456
Alignment:
Q  89 cctcccttgaggtatgttgaaatgacactcacctcccctctatttttcaaccatacacaattctcccctacttaattttcaatgtgacaaaca 181  Q
    ||||||||||||| |||| || || |||||||  || ||  |||||| ||||| |||||| | |||||| |||||||||||| |||| |||||    
T  5515364 cctcccttgaggtttgttaaactgtcactcacaccctctacattttttaaccaaacacaactatcccctgcttaattttcaacgtgataaaca 5515456  T

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