View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718_low_21 (Length: 251)
Name: NF5718_low_21
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_low_21 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 16 - 251
Target Start/End: Complemental strand, 39924552 - 39924317
Alignment:
| Q |
16 |
ataatgtgaattgaatacatattattgtagaacttgaatttaagaataagtatgaatcctatgtatatgttggagacgaatgtcagtataccgaatatta |
115 |
Q |
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| T |
39924552 |
ataatgtgaattgaatacatattattgtagaacttgaatttaagaataagcatgaatcctatgtatatgttggagacgaatgtcagtataccgaatatta |
39924453 |
T |
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| Q |
116 |
taaaggaactaacgtcaaagtaggtattattagatgattatgattttctatagtattaagtgtaagtatttcccttctcnnnnnnnggtataaattattt |
215 |
Q |
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| T |
39924452 |
taaaggaactaacgtcaaagtaggtattattatatgattatgattttctatagtattaagtgtaagtatttcccttctcaaaaaaaagtataaattattt |
39924353 |
T |
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| Q |
216 |
tcgttctatttgaattattaaaaatttatactttta |
251 |
Q |
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| T |
39924352 |
tcgttctatttgaattattaaaaatttatactttta |
39924317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 39912043 - 39911869
Alignment:
| Q |
16 |
ataatgtgaattgaatacatattattgtagaacttgaatttaagaataagtatgaatcctatgtatatgttggagacgaatgtc-agtataccgaatatt |
114 |
Q |
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| T |
39912043 |
ataatgtgaatttaatgcatattattgtagaacttgaatttaagaaaaaatatgaatcatatgtatatgttggagacgaatgtcaagtagaccgaatatt |
39911944 |
T |
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| Q |
115 |
ataaaggaactaacgtcaaagtaggtattattagatgatt------atgattttctatagtattaagtgtaagta |
183 |
Q |
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| T |
39911943 |
ataaaggaattaaggccaaagtaagtattattagatgattatgatcatgattttctatagtgttaagtgtaagta |
39911869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 39879490 - 39879418
Alignment:
| Q |
16 |
ataatgtgaattgaatacatat----tattgtagaacttgaatttaagaataa--gtatgaatcctatgtata |
82 |
Q |
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| T |
39879490 |
ataatgtgaattgaatacatatatattattgtagaacttgaatttaagaataaatatatgaatcgtatgtata |
39879418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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