View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718_low_24 (Length: 238)
Name: NF5718_low_24
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_low_24 |
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Alignment Details
Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 32207352 - 32207157
Alignment:
| Q |
23 |
ccttaactacaccaaaactatattgcaacttgtactacaaaaatatttctcacataacacctttgcctctcttacttcatatatagctttcttcattttc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32207352 |
ccttaactacaccaaaactatattgcaacttgtactacaaaaatatttctcacataacacctttgcctctcttacttcatatatagctttcttcattttc |
32207253 |
T |
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| Q |
123 |
ttcttcatcattaaatcattaacacgcatgttctcatagtcatattcatctccctaagagagtttcatttttattgtttattttttagatatatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
32207252 |
ttcttcatcattaaatcattaacacgcatgttctcataatcatattcatctcccttagagagtttcatttttattgtttattttttagatatatat |
32207157 |
T |
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