View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5718_low_3 (Length: 715)
Name: NF5718_low_3
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_low_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 118 - 699
Target Start/End: Complemental strand, 38019155 - 38018571
Alignment:
| Q |
118 |
atcttgtctaattcaagtgattttgtagctttttagatgacaaagaaaatttcttacttgaagtggtatcttgtgttttggttgagctagaagagtgaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38019155 |
atcttgtctaattcaagtgattttgtagctttttagatgacaaagaaaattgcttacttgaagtggtatcatgtgttttggttgagctagaagagtgaag |
38019056 |
T |
|
| Q |
218 |
gaaattgttatatatagaagtttaaagacgcccaaagaatataacaaaaccaggagctacggttttcagatatatgtatacttcacctcacctctatctc |
317 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38019055 |
gaaattattatatatagaagtttaaagacgcccaaagaatataacaaaaccaggagctacggttttcagatatatgtatacttcacctcacctctatctc |
38018956 |
T |
|
| Q |
318 |
aattaaatattcaaacttttccaaatatttttgaatctttttct--gtgtaaaaaagagatcaaatatatcatctgattctttaaagttttgtttttact |
415 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38018955 |
aattaaatatttaaacttttccaaatatttttgaatctttttctgtgtgtaaaaaagagatcaaatatatcatctgattctttaaagttttgtttttact |
38018856 |
T |
|
| Q |
416 |
agactagactagactagatgactccattaagtttgtgaggaaaacaagaggctgtgttggcgatgtattgttggtggg-aaaaaaggcacatggttttgg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
38018855 |
agactagactagactagatgactccattaagtttgtgaggaaaacaagaggctgtgttggcgatgtattgttggtgggaaaaaaaggcacatggttttgg |
38018756 |
T |
|
| Q |
515 |
ttttttgggggtatttattttgtggttacatgaactgaaataggaagtagtatcaaagaaaatctcaatacttgtatttggacttcatttgtaatcgtag |
614 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38018755 |
ttttttgggggtatttattttgtggttacatgaactgaaataggaagtagtatcaaagaaaatctcaatacttgtatttggacttcatttgtaatcgtag |
38018656 |
T |
|
| Q |
615 |
gaccacacatcttgcaatttgccaatgctcattcatcgctcatccttaattcaaggcacacatcgtttatagtagggatgacaca |
699 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
38018655 |
gaccacacatcttgcaatttgccaatgctcattcattgctcatccttaattcaaggcacacatcgtttatagtagggatggcaca |
38018571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 44 - 102
Target Start/End: Complemental strand, 38021068 - 38021010
Alignment:
| Q |
44 |
gataattatatataaataatttttgaagaaataataattgtgttaagagtcccgcatcg |
102 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38021068 |
gataaatatatataaataatttttgaagaaataataattgtgttaagagtcccacatcg |
38021010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University