View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718_low_8 (Length: 393)
Name: NF5718_low_8
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 20 - 302
Target Start/End: Original strand, 12380234 - 12380516
Alignment:
| Q |
20 |
ctggactaggcaactttgaaggagaggtggtacactccaaatactacaaatctggttcaaaatacgaatcaaaaaatgttttggtagttggatgtggtaa |
119 |
Q |
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| T |
12380234 |
ctggactaggcaacttcgaaggagaggtgatgcactccaaatactacaaatctggttcaaaatacgaatcaaaaaatgttttggtagttgggtgtggtaa |
12380333 |
T |
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| Q |
120 |
ctcaggaatggagattgcttatgacctccacaattggggtgctagcccttccattgtcattcgaaatccggtaatttatttttaacatactcttttaata |
219 |
Q |
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| T |
12380334 |
ctcaggaatggagattgcttatgacctccacaattggggtgctagcgcttccattgtcattcgaaatccggtaatttttttttaacttactcttttaata |
12380433 |
T |
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| Q |
220 |
aactaacagtaacaaaacataatcactcactttttgtacattcatatgacacatgatgaattactttaaacatgtttcacata |
302 |
Q |
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| T |
12380434 |
aactaacagtaacaaaacataatcactcactttttgtacattcatatgacacatgatgaattactttaaacatgtctcacata |
12380516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 323 - 390
Target Start/End: Original strand, 12380825 - 12380892
Alignment:
| Q |
323 |
tgcatgtcttcaccagagaaatgattcaccaaggaatgcgtatggtgaagtatttgccggttcatatt |
390 |
Q |
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| T |
12380825 |
tgcatgtcttcactagggaaatgattcaccaaggaatgcgtatggtgaagtatttgccggttcatatt |
12380892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 99; Significance: 9e-49; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 31 - 193
Target Start/End: Original strand, 14352814 - 14352976
Alignment:
| Q |
31 |
aactttgaaggagaggtggtacactccaaatactacaaatctggttcaaaatacgaatcaaaaaatgttttggtagttggatgtggtaactcaggaatgg |
130 |
Q |
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| T |
14352814 |
aactttgaaggagaggtggtacactccaaaaattacaaatctggttcaaaatataaaacaaaagaggttttggtagttggatgtggtaactcaggaatgg |
14352913 |
T |
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| Q |
131 |
agattgcttatgacctccacaattggggtgctagcccttccattgtcattcgaaatccggtaa |
193 |
Q |
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| T |
14352914 |
agattgcttatgacctccataactcgggtgctaacccatctattgtggttcgaagtccggtaa |
14352976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 14353641 - 14353698
Alignment:
| Q |
320 |
agttgcatgtcttcaccagagaaatgattcaccaaggaatgcgtatggtgaagtattt |
377 |
Q |
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| T |
14353641 |
agtttcatgtcttcaatagagaaataattcaccaagggatgcgaatggtgaaatattt |
14353698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 32 - 162
Target Start/End: Complemental strand, 43886359 - 43886229
Alignment:
| Q |
32 |
actttgaaggagaggtggtacactccaaatactacaaatctggttcaaaatacgaatcaaaaaatgttttggtagttggatgtggtaactcaggaatgga |
131 |
Q |
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||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||| | |||||||||||||| |||||||||||| |||||| |
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| T |
43886359 |
actttgaaggagaggtggtacactcgaaatattacaaatctggttcaaaatatgaatcaaaagaggttttggtagttgggtgtggtaactcataaatgga |
43886260 |
T |
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| Q |
132 |
gattgcttatgacctccacaattggggtgct |
162 |
Q |
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| T |
43886259 |
gattgcttatgatctccataactggggtgct |
43886229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 319 - 384
Target Start/End: Complemental strand, 43884244 - 43884179
Alignment:
| Q |
319 |
cagttgcatgtcttcaccagagaaatgattcaccaaggaatgcgtatggtgaagtatttgccggtt |
384 |
Q |
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| T |
43884244 |
cagtttcatgtcttcagtagagaaatgattcgtcaagggatgcgaatggtgaattatttgccggtt |
43884179 |
T |
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