View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5718_low_9 (Length: 391)
Name: NF5718_low_9
Description: NF5718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5718_low_9 |
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| [»] scaffold1108 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 20533029 - 20532706
Alignment:
| Q |
1 |
attaaatccaaactgcaattaattctagggaatgaccctagaagtgtttgtttaggatataaggggcatggcatcagcaatcaattcaacagccatatac |
100 |
Q |
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| T |
20533029 |
attaaatccaaactgcaattaattctagggaatgaccctagaagtgtttgtttaggatataaggggcatggcatcagcaatcaattcagcagccatatac |
20532930 |
T |
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| Q |
101 |
ttgtttgtagcctctgtaggatgaagaccatcccagaatacatacttagatgcattaggacatgttgttataatggnnnnnnnattattaaatataggaa |
200 |
Q |
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| T |
20532929 |
ttgtttgtagcctctgtaggatgaagaccatcccagaatacatacttagatgcattaggacatgttgttataatggtttttttattattaaatataggaa |
20532830 |
T |
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| Q |
201 |
tattctctaccaagctcgacccaatacatccctttcttgtttctgaaaatcctgcaagtaaaaatgtatacatgtcacaacccaccataacaattaagaa |
300 |
Q |
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| T |
20532829 |
tattctctaccaagctcgacccaatacatccctttcttgtttctgaaaatcctgcaagtaaaaatgtatacatgtcacaacccaccataacaattaagaa |
20532730 |
T |
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| Q |
301 |
acaaattaacaatcatgttagtgg |
324 |
Q |
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| T |
20532729 |
acaaattaacaatcatgttagtgg |
20532706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 341 - 372
Target Start/End: Complemental strand, 20532720 - 20532689
Alignment:
| Q |
341 |
caatcatgttagtggtaattaattcacagacc |
372 |
Q |
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| T |
20532720 |
caatcatgttagtggtaattaattcacagacc |
20532689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1108 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1108
Description:
Target: scaffold1108; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 104 - 155
Target Start/End: Complemental strand, 1329 - 1278
Alignment:
| Q |
104 |
tttgtagcctctgtaggatgaagaccatcccagaatacatacttagatgcat |
155 |
Q |
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| T |
1329 |
tttgtagcttctgtaggatgaaaactatcccagaatacatattttgatgcat |
1278 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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