View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719-Insertion-1 (Length: 711)
Name: NF5719-Insertion-1
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719-Insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 140 - 528
Target Start/End: Original strand, 40410669 - 40411051
Alignment:
| Q |
140 |
tactgagcccttgaacattactcttctctaactatttattagtcaaggagagtaggatcctttgccaaaatagcttccatgagaagccaaactaccttat |
239 |
Q |
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| T |
40410669 |
tactgagcccttgaacattacccttctctaactatttattagtcaaggagagtaggatcctttgccaaaatagcttccatgagaagccaaactaccttat |
40410768 |
T |
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| Q |
240 |
ttagaatcccgttgaataatatgcaccataatctcttttgcagatgcaataaatttgagagataaaagtatgattttttagttgatagcaagacaaaatt |
339 |
Q |
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| T |
40410769 |
ttagaatcccgttgaataatatgcaccataatctcttttgcagatgcaataaatttgagagataaaagtatgactttttagttgatagcaagacaaattt |
40410868 |
T |
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| Q |
340 |
gttagctggaatcaaagtttggacttcatttttagtactcctttcaacatcatcttgacaatattaataatatcagttagctacatatactatctctgac |
439 |
Q |
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| T |
40410869 |
gttagctggaatcaaagtttggacttcatttttagtact--gatcaacatcatcttgacaatattaataatatcagttagctacatatactacctctgac |
40410966 |
T |
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| Q |
440 |
aacggataaaaggtatgatctaacttagaatatatatacttccatatattattgccctcccaactattaaatcattgagatggcaacat |
528 |
Q |
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| T |
40410967 |
aacggataaaaggtatgatctaacttaga----acatacttccatatattattgccctcccaactattaaatcatagagatggcaacat |
40411051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 8 - 130
Target Start/End: Original strand, 40410503 - 40410618
Alignment:
| Q |
8 |
caccaaacccttagatatttccttattaccttcagctggcatgcatgatagccacgccacaacccaagccatatttattaatcaagaaactgtatgctaa |
107 |
Q |
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| T |
40410503 |
caccaaacccttagatatttcctta---ccttcagctggcatgcatgatagccacgccacaacccaagcca----tattaatcaagaaactgtatgctaa |
40410595 |
T |
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| Q |
108 |
acaacgtacatagaaacacccct |
130 |
Q |
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| T |
40410596 |
acaacgtacatagaaacacccct |
40410618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 628 - 711
Target Start/End: Original strand, 40411527 - 40411607
Alignment:
| Q |
628 |
ataattgcttgccgaatactactgctagtacaaagtgtacaaccttgttacatgatatatataagctgaatacgtacgttgtcc |
711 |
Q |
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| T |
40411527 |
ataattgcttgccgaatactact---agtacaaagtgtacaaccttgttacatgatatatataaactgaatacgtacgttgtcc |
40411607 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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