View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719-Insertion-2 (Length: 655)
Name: NF5719-Insertion-2
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719-Insertion-2 |
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| [»] chr2 (12 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 493; Significance: 0; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 143 - 655
Target Start/End: Complemental strand, 5593655 - 5593143
Alignment:
| Q |
143 |
tttgtatttcagatcaatttaaccttaacccaaagtcaataatcacttgatcgttaacattgcatttaatatcatcaatttaattagatagatggtctgg |
242 |
Q |
| |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
5593655 |
tttgtatttctgatcaatttaaccttaacccaaagtcaataatcacttgatcgttaacattgcatttaatatcatcaatttaattagatagatggtctcg |
5593556 |
T |
|
| Q |
243 |
tatcaggagtagtgcgtatgtctatttaatgtaaagtagcttgccaaaaataaacatgtcttcatcttgttatcggctagtaccttagttatattttctt |
342 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593555 |
tatcaggagtagtgcgtatgtctatttaatgtaaagtagcttgccaaaaataaacatgtcttcatcttgttatcggctagtaccttagttatattttctt |
5593456 |
T |
|
| Q |
343 |
cttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagtt |
442 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593455 |
cttagagatggaatctatgataaagccatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagtt |
5593356 |
T |
|
| Q |
443 |
ccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacctttctgctaactctccaagatcaaattacaatccttacgggatcg |
542 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593355 |
ccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaaccttcctgctaactctccaagatcaaattacaatccttacgggatcg |
5593256 |
T |
|
| Q |
543 |
acttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaag |
642 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593255 |
acttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaag |
5593156 |
T |
|
| Q |
643 |
tgtttttctttgt |
655 |
Q |
| |
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||||||||||||| |
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| T |
5593155 |
tgtttttctttgt |
5593143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 343 - 655
Target Start/End: Complemental strand, 5587219 - 5586910
Alignment:
| Q |
343 |
cttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagtt |
442 |
Q |
| |
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|||| ||||||||| ||| || ||| ||||||||| ||| ||| || |||| ||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
5587219 |
cttaaatatggaatttataatcaagaaatggttggtagttcttattgttttcttttctgcaaactatttgcaacaatgtgtcaatgggaaatcccaagtg |
5587120 |
T |
|
| Q |
443 |
ccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacctttctgctaactctccaagatcaaattacaatccttacgggatcg |
542 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||| ||||||||||||| |||||| || | |||| ||| ||| ||||||||||| || || |||| |
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|
| T |
5587119 |
ccttgtctatttatctttggagactctttatctgatagtggaaacaacaataaccttcctac---ctctgcaaaatctaattacaatccctatggaatcg |
5587023 |
T |
|
| Q |
543 |
acttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattatgaaacatgaag |
642 |
Q |
| |
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|||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |
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| T |
5587022 |
actttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaacattcttttaacttaaccatattatgaaacatgaag |
5586923 |
T |
|
| Q |
643 |
tgtttttctttgt |
655 |
Q |
| |
|
||||||||||||| |
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| T |
5586922 |
tgtttttctttgt |
5586910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 8 - 170
Target Start/End: Complemental strand, 5593820 - 5593658
Alignment:
| Q |
8 |
tcgatagtcatgggtttgtatcatgttggtgtctttgtaagagcatctataatgaagacatctatttttgggtattgggtctcacacgaacacatcactg |
107 |
Q |
| |
|
||||||||||||| |||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
5593820 |
tcgatagtcatggatttgtatcatgttggtatcttgttaagagcatctataatgaagccatctatttttgggtattgggtctcacacgaacacatcactg |
5593721 |
T |
|
| Q |
108 |
taaagtctaattaaaaattgttctaagggtttaaatttgtatttcagatcaatttaaccttaa |
170 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
5593720 |
taaagtctaattaaaaattgttctaagggtttaaatttgtatttaagatcaatttaaccttaa |
5593658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 337 - 620
Target Start/End: Complemental strand, 5573694 - 5573414
Alignment:
| Q |
337 |
tttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcc |
436 |
Q |
| |
|
|||||||||||| ||||||||||| || || ||||||||||| ||| ||| || ||||||||||||||||||| | |||| ||||||||||||||| |
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|
| T |
5573694 |
tttcttcttagagatggaatctataatcaaaacatggttggtggttcttattgttttcttgtctgcaaactattttaaacaatgtgtcaatgggaaatct |
5573595 |
T |
|
| Q |
437 |
caagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacctttctgctaactctccaagatcaaattacaatccttacg |
536 |
Q |
| |
|
||||| |||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||| | ||| |||| ||| ||| |||||||| ||||| | |
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|
| T |
5573594 |
caagtgccttgtgtatttatctttggagattctttatctgatagtggaaacaacaataacct---tcctacctctgcaaaatctaattacaaaccttatg |
5573498 |
T |
|
| Q |
537 |
ggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaactt |
620 |
Q |
| |
|
| || ||||| |||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||| |
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|
| T |
5573497 |
gaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgacataataagtaacattctttcaactt |
5573414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 369 - 633
Target Start/End: Complemental strand, 5576824 - 5576562
Alignment:
| Q |
369 |
catggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaatcccaagttccttgtctttttatctttggagattc |
468 |
Q |
| |
|
|||||||| || ||| |||||| |||| ||||||||||||||||| |||| ||||||||| ||||||||||| || ||||||||||||||||||||||| |
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|
| T |
5576824 |
catggttgatggttcttattcttatcttttctgcaaactatttgcaacaatttgtcaatggaaaatcccaagtgccatgtctttttatctttggagattc |
5576725 |
T |
|
| Q |
469 |
tttatctgatggtggaaacaacaacaacctttctgctaactctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaaga |
568 |
Q |
| |
|
|||||||||| |||||||||| |||||||| | | | |||| ||| ||| |||||||| ||||| || || ||||||||||||||||||||||||||| |
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|
| T |
5576724 |
tttatctgatagtggaaacaataacaacct---tcccacctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaaga |
5576628 |
T |
|
| Q |
569 |
tttaccaacggtcgaactacaattgacataataagtaacatt-cttttaacttatccatattatga |
633 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |||| | || |||||||| ||||||||| |
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|
| T |
5576627 |
tttaccaacggtcgaacttcaattgacataataagtagcattccgttcaacttatctatattatga |
5576562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 335 - 471
Target Start/End: Complemental strand, 5582971 - 5582835
Alignment:
| Q |
335 |
attttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
434 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5582971 |
attttcttcttagagatggattctataataaagacatggttggtgtttcctattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
5582872 |
T |
|
| Q |
435 |
cccaagttccttgtctttttatctttggagattcttt |
471 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5582871 |
cccaagttccttgtctttttatctttggagattcttt |
5582835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 522 - 614
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
| Q |
522 |
attacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
614 |
Q |
| |
|
||||||| ||||| || || |||| |||||| || ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt |
12064775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 335 - 614
Target Start/End: Original strand, 12051663 - 12051943
Alignment:
| Q |
335 |
attttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactatttgcagcaatctgtcaatgggaaat |
434 |
Q |
| |
|
|||||||||||||| | |||||||||||| ||| ||||||||||| | | |||||| || |||| ||||||||||| || || |||| ||| ||||| |
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|
| T |
12051663 |
attttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattcttttcatgtccgcaaactatttacaacacagtgtctatgagaaat |
12051762 |
T |
|
| Q |
435 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacctttctgctaactctccaagatcaaattacaatcctta |
534 |
Q |
| |
|
||||| ||| |||| ||||||||||| || ||||||| |||| ||| ||||||||| ||||| | ||| || | | || ||||||| ||||| |
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|
| T |
12051763 |
atcaagtacctagtctgtttatctttggggactctttatatgatagtgaaaacaacaataacct---tcctacctttgcttaatttgattacaaacctta |
12051859 |
T |
|
| Q |
535 |
cgggatcga---cttcc-cgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaacattcttt |
614 |
Q |
| |
|
|| ||||| ||||| || | ||| ||||| ||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
|
|
| T |
12051860 |
tggaatcgattccttcctcgctcggcgcaaccagaagatttaccaacggtcgaactgcaattaacataataagtaacgttcttt |
12051943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 564 - 631
Target Start/End: Original strand, 12059314 - 12059381
Alignment:
| Q |
564 |
gaagatttaccaacggtcgaactacaattgacataataagtaacattcttttaacttatccatattat |
631 |
Q |
| |
|
||||||||||||| ||||||||| ||||||||||||||||||||||||||| || ||| | ||||||| |
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|
| T |
12059314 |
gaagatttaccaatggtcgaactgcaattgacataataagtaacattctttcaatttaactatattat |
12059381 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 574 - 634
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
| Q |
574 |
caacggtcgaactacaattgacataataagtaac-attcttttaacttatccatattatgaa |
634 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| ||||||| || ||||| |||||||||| |
|
|
| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa |
5582732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 331 - 411
Target Start/End: Original strand, 12064543 - 12064623
Alignment:
| Q |
331 |
ttatattttcttcttagatatggaatctatgataaagccatggttggtgtttccaattcttctcttgtctgcaaactattt |
411 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| ||||||||||| | | |||||| || |||| ||||||||||| |
|
|
| T |
12064543 |
ttatattttcttcttagagacggaatctatgatcaagacatggttggtgatgcttattcttttcatgtccgcaaactattt |
12064623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 331 - 379
Target Start/End: Original strand, 12059091 - 12059139
Alignment:
| Q |
331 |
ttatattttcttcttagatatggaatctatgataaagccatggttggtg |
379 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| ||| ||||||||||| |
|
|
| T |
12059091 |
ttatattttcttcttagagacggaatctatgatcaagacatggttggtg |
12059139 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 435 - 498
Target Start/End: Complemental strand, 36358051 - 36357988
Alignment:
| Q |
435 |
cccaagttccttgtctttttatctttggagattctttatctgatggtggaaacaacaacaacct |
498 |
Q |
| |
|
||||||| || |||||||| || ||||||||||||||||| || ||||||||||||| ||||| |
|
|
| T |
36358051 |
cccaagtaccatgtcttttcatttttggagattctttatcagacagtggaaacaacaataacct |
36357988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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