View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5719-Insertion-3 (Length: 615)

Name: NF5719-Insertion-3
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5719-Insertion-3
NF5719-Insertion-3
[»] chr3 (1 HSPs)
chr3 (7-615)||(49297878-49298480)


Alignment Details
Target: chr3 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 7 - 615
Target Start/End: Original strand, 49297878 - 49298480
Alignment:
Q  7 agtttctacgtatttgcacttgtcgaggaaacttattgcttgccatttgaatcatcgccatcctttccccacgtttgccactagatgtggatcgtatcat 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| |||||||||||||||||    
T  49297878 agtttctacgtatttgcacttgtcgaggaaacttattgcttgccatttgaatcatcgccatcctttcttcacgtttgccactggatgtggatcgtatcat 49297977  T
Q  107 atgttctcaaatgatgagaaattagtgggaagattctttctcttcccacatacggtgccaaatgttccttctagatgacacctagtgttccggcctttct 206  Q
    |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49297978 atgttctcaaatgatgagaaatcagtgagaagattctttctcttcccacatacggtgccaaatgttccttctagatgacacctagtgttccggcctttct 49298077  T
Q  207 tcattaacaaatctggaaacaaaagatatgagtttgttttattaaagaagctaaaacttaaaagtaataattaag-nnnnnnnntaatcacatggattgc 305  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||    
T  49298078 tcattaacaaatcaggaaacaaaagatatgagtgtgttttattaaagaagctaaaacttaaaagtaataattaagaaaaaaaaataatcacatggattgc 49298177  T
Q  306 cgttgccgtttatagagatataccaagacattgaatttcttccttattccgtgcaaaacttccctgttttgggcgggaaatcaagttaatacctttttcg 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49298178 cgttgccgtttatagagatataccaagacattgaatttcttccttattccgtgcaaaacttccctgttttgggcgggaaatcaagttaatacctttttcg 49298277  T
Q  406 tttttgatcatgatcctcacgcggttaagagagtcatttcaataacattattcacagggtcaaaatagtcattagagtttacactcgttcaaatattgac 505  Q
    |||| |||||||||||||||||||||||||||||||||||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49298278 ttttcgatcatgatcctcacgcggttaagagagtcatttcaattac---attcacagggtcaaaatagtcattagagtttacactcgttcaaatattgac 49298374  T
Q  506 gacannnnnnnnnnnacatatatacaatgatatcggtaacaaaaaagtttctaaacagaaagatatgatcacatctatatctccatcactataccatagc 605  Q
    |||                |||||||||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  49298375 gacggtgcccccctc---catatacaatgat-tcgataacaaaaaagtttctaaacagaaagatatgataacatctatatctccatcactataccatagc 49298470  T
Q  606 tcacattcac 615  Q
    ||| ||||||    
T  49298471 tcatattcac 49298480  T

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