View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719-Insertion-4 (Length: 478)
Name: NF5719-Insertion-4
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719-Insertion-4 |
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Alignment Details
Target: chr2 (Bit Score: 412; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 8 - 467
Target Start/End: Original strand, 11298128 - 11298587
Alignment:
| Q |
8 |
cttcttgatcagaatcagacaactctgcaaactccatttcagaaccaccgatgtcattaccaccttgatttgatgcgagttttgcatggttacgcggttg |
107 |
Q |
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| T |
11298128 |
cttcttgatcagaatcagacaactctgcaaactccatttcaaaaccaccgatgtcattaccaccttgattggatgcgagttttgcatggttacgcggttg |
11298227 |
T |
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| Q |
108 |
catcaaccaagatagcaagtacggaagcgatggagttcgaacacgaaaaccaaacaacttattgtaattaaacatttcttgagttttggaaaggctagtt |
207 |
Q |
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| T |
11298228 |
catcaaccaagatagcaagtacggaagcgatggagttcgaacacgaaaaccaaacaacttattgtaattaaacatttcttgagttttggaaaggctagtt |
11298327 |
T |
|
| Q |
208 |
gcttccgatagaatcttcattgagtagcacaagagcagcaaaagaggtctccatgtttgaccattaggaagcactttgtgtccatttttattctttctac |
307 |
Q |
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| T |
11298328 |
gcttctgatagaatcttcattgagtagcacaagagcagcaaaagaggtctccaagtttgaccattaggaagcactttgtgtccatttttattctttctac |
11298427 |
T |
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| Q |
308 |
aagaagggtgattctcaacaagtgcaaccggattcatcaaactcggattcataatccgttcatcgccaataacctgtccaatggcttgttgaactgcgca |
407 |
Q |
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| T |
11298428 |
aagaagggtgattctcaacaagtgcaaccggattcatcaaactcagattattaatctgttcgtcgccaataacctgtccaatggcttgttgaaccgcgcg |
11298527 |
T |
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| Q |
408 |
atttctctgagtcacaaacacatcataactcaatggtgaacctaatggaccatccagagg |
467 |
Q |
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| T |
11298528 |
atttctctgagtcacaaacacatcataactcaatggtgaacctaatggaccatccggagg |
11298587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 217 - 361
Target Start/End: Complemental strand, 36608465 - 36608321
Alignment:
| Q |
217 |
agaatcttcattgagtagcacaagagcagcaaaagaggtctccatgtttgaccattaggaagcactttgtgtccatttttattctttctacaagaagggt |
316 |
Q |
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||||||||||||||||| || || |||| || ||||||||||| ||||||| ||||||||||| || || |||| | | || || | ||| ||||| | |
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| T |
36608465 |
agaatcttcattgagtaacataaaagcaataacagaggtctccaactttgaccgttaggaagcaccttctggccatctctgtttttccgacatgaaggat |
36608366 |
T |
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| Q |
317 |
gattctcaacaagtgcaaccggattcatcaaactcggattcataa |
361 |
Q |
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| T |
36608365 |
ggttttcaacaagagaaactggattcatcaaacttggattcataa |
36608321 |
T |
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