View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5719-Insertion-5 (Length: 380)
Name: NF5719-Insertion-5
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719-Insertion-5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 8 - 342
Target Start/End: Complemental strand, 9396096 - 9395762
Alignment:
| Q |
8 |
attcgctctcgttccgtctgttcttggtggcgatcttctatcccaaattactatcaaaaacactatttacccgtaaagtttggacaactctcctgccaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9396096 |
attcgctctcgttccgtctgttcttggtggcgatcttctatcccaaattactatcaaaaacactatttacccgtaaagtttggacaactctcctgccaac |
9395997 |
T |
|
| Q |
108 |
tattcggttcccacaccaacgttgatgccattagctacctcatcaaacacgatatttttctcatcaaaccaccaaaacaccaacaaactctccaccagcg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| | |
|
|
| T |
9395996 |
tattcggttcccacaccaacgttgatgccattagctacctcatcaaacacgacatttttctcatcaaaccaccaaaacacaaacaaactctccaccagtg |
9395897 |
T |
|
| Q |
208 |
cccttggttaatcagaattggaccaaattttgacggcaaaaccaaactcctgtaccctttcttatttaacgcctacaaacctttaccatcatgtttcaat |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
9395896 |
cccttggttaatcagaattggaccaaattttgacggcaaaacccaactcctgtaccctttcttatttaactcctacaaacctttaccatcttgtttcaat |
9395797 |
T |
|
| Q |
308 |
aatgttctcgacttcaacaaactctctgtcatcca |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
9395796 |
aatgttctcgacttcaacaaactctctgtcatcca |
9395762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 168; Significance: 6e-90; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 2605999 - 2606326
Alignment:
| Q |
8 |
attcgctctcgttccgtctgttcttggtggcgatcttctatcccaaattactatcaaaaacactatttacccgtaaagtttggacaactctcctgccaac |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || | ||| ||||| ||||| ||||| |||||||||||||||||||| |||| ||||||| |
|
|
| T |
2605999 |
attcgctctcgttccgtctgttcttggtggcgatcttccattc-aaacgactataaaaaaaactatatacccgtaaagtttggacaattctcttgccaac |
2606097 |
T |
|
| Q |
108 |
tattcggttcccacaccaacgttgatgccattagctacctcatcaaacacgatatttttctcatcaaaccaccaaaacaccaacaaactctccaccagcg |
207 |
Q |
| |
|
|||| |||||||| ||||| |||||| ||| |||||||| |||||||| ||||||||| |||||||||||||||||||||||| ||||||||| || |
|
|
| T |
2606098 |
tatttcgttcccaccccaacattgatgttgttatgtacctcataaaacacgacatttttctcttcaaaccaccaaaacaccaacaaaatctccaccaacg |
2606197 |
T |
|
| Q |
208 |
cccttggttaatcagaattggaccaaattttgacggcaaaaccaaactcctgtaccctttcttatttaacgcctacaaacctttaccatcatgtttcaat |
307 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| |||||||| ||| ||||||||||||| ||||||| |
|
|
| T |
2606198 |
cccttggttaatcagaattggaccagattttgacggcaaaaccaaacttttgcaccctctcttatttgacg------gacctttaccatcacttttcaat |
2606291 |
T |
|
| Q |
308 |
aatgttctcgacttcaacaaactctctgtcatcca |
342 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
2606292 |
tatgttctcaacttcaacaaactctctgtcatcca |
2606326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University