View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5719-Insertion-7 (Length: 269)

Name: NF5719-Insertion-7
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5719-Insertion-7
NF5719-Insertion-7
[»] chr6 (2 HSPs)
chr6 (123-269)||(8130981-8131134)
chr6 (78-123)||(8131185-8131230)


Alignment Details
Target: chr6 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 123 - 269
Target Start/End: Complemental strand, 8131134 - 8130981
Alignment:
Q  123 tttgcttcaccaagtgcctcttcgatctcctgttggaccatgaacaccctc------gtcttcattttccgtaggctgaaatcattattgtctatgcatt 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||| ||||||||||||||||||||||||||||    
T  8131134 tttgcttcaccaagtgcctcttcgatctcctgttggaccatgaacaccctcaccctcgtcttcattttccgcaggctgaaatcattattgtctatgcatt 8131035  T
Q  217 tctcgatattgaaattcgcagatttgtagagtaagccacaaacaa-gacaatca 269  Q
    ||||||||||||||||||||||  ||||||||||||||||||||| ||||||||    
T  8131034 tctcgatattgaaattcgcagagatgtagagtaagccacaaacaacgacaatca 8130981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 78 - 123
Target Start/End: Complemental strand, 8131230 - 8131185
Alignment:
Q  78 gagccaaatcgtagaagcaatcttcctcttcgaatcaaggcattat 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||    
T  8131230 gagccaaatcgtagaaccaatcttcctcttcgaatcaaggcattat 8131185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University