View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5719_high_1 (Length: 838)

Name: NF5719_high_1
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5719_high_1
NF5719_high_1
[»] chr6 (1 HSPs)
chr6 (1-832)||(3972863-3973706)


Alignment Details
Target: chr6 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 1 - 832
Target Start/End: Original strand, 3972863 - 3973706
Alignment:
Q  1 ctgggccccaccaccaccatacccagatccatattcaccctcttgcttcctcccaccatacccagatccaatttcagattcttgaccaccgtacccagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3972863 ctgggccccaccaccaccatacccagatccatattcaccctcttgcttcctcccaccatacccagatccaatttcagattcttgaccaccatacccagat 3972962  T
Q  101 ccttgtttcctcccatnnnnnnnnnnnnnnnnnnnngattcagggtgaaaactagaaggtgcaggtctaggtttcggtctcacatagctactatactcag 200  Q
    ||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3972963 ccttgtttcctcccatacccaccaccaccatcaccagattcagggtgaaaactagaaggtgcaggtctaggtttcggtctcacatagctactatactcag 3973062  T
Q  201 tagcaagagcttcatcaccataagcagaaggttgagcataagattcaaattgaggacgatcataatcaaaatcattgtttgatgaacctgatgggtaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3973063 tagcaagagcttcatcaccataagcagaaggttgagcataagattcaaattgaggacgatcataatcaaaatcattgtttgatgaacctgatgggtaaca 3973162  T
Q  301 tgtttcatcggaaggtggaattggtctaccgtaggtaaggtgaatgtcgtatccaccaccgtatggtgttggatcgtattcgtcgaaatcatcgacactt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3973163 tgtttcatcggaaggtggaattggtctaccgtaggtaaggtgaatgtcgtatccaccaccgtatggtgttggatcgtattcgtcgaaatcatcgacactt 3973262  T
Q  401 tcgtcgccgtttccgccacgagtgaagtatgacattgtttcttgatcggnnnnnnnggttcagcgaattgaataaggatgatgaatttcaggatctaaag 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  3973263 tcgtcgccgtttccgccacgagtgaagtatgacattgtttcttgatcggtttttttggttcagcgaattgaataaggatgatgaatttcaggatctaaag 3973362  T
Q  501 tgttatttatacttgtctgagaaaaatcagtggttgaaagttgaaactatctctatcggacaagtggcgaggatccgtagtcttcgtgagtttaactcag 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||    
T  3973363 tgttatttatacttgtctgagaaaaatcagtggttgaaagttgaaactatctctattggacaagtggcgaggatccgtcgttttcgtgagtttaactcag 3973462  T
Q  601 ttgaagttgatagatacactacgtggatgatatgaggttcaaaccccgaccaccacnnnnnnntaatggcgaggatccatagtcatttggatcccagaac 700  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||  |||||||||||||||    
T  3973463 ttgaagttgatagatacactgcgtggatgatatgaggttcaaaccccgaccaccacaaaaaaataatggcgaggatccatagtagtttggatcccagaac 3973562  T
Q  701 gtttaaagagttacaaatagtcgataaatttacgaaattttaaaataatattcgattgtgcactttgatcaaa------------tagtggagtataggt 788  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||    
T  3973563 gtttaaagagttacaaatagtccataaatttacgaaattttaaaataatattcgattgtgcactttgatcaaaatagtaccaggttagtggagtataggt 3973662  T
Q  789 tgttgttactaactgttgcattggaggttaatattgatgatgtc 832  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  3973663 tgttgttactaactgttgcattgcaggttaatattgatgatgtc 3973706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University