View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719_high_12 (Length: 313)
Name: NF5719_high_12
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 272; Significance: 1e-152; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 10 - 305
Target Start/End: Complemental strand, 11298136 - 11297841
Alignment:
| Q |
10 |
atcaagaagatgatgaagatgaatatgacaggcttttgccgtttaggccacttaagaaatctcaggttgctaagctaagtagagaacaacggaaagcata |
109 |
Q |
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| T |
11298136 |
atcaagaagatgatgaagatgaatatgacaggcttttgccgtttaggccacttaagaaatctcaggttgctaagctaagtagagaacaacggaaagcata |
11298037 |
T |
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| Q |
110 |
ctttgaagagtatgattaccgcgtcaaacttctagtgaagaagcaatggaaagaggaattgagaaggatgagggagataaagaagaataaaggtaaatca |
209 |
Q |
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| T |
11298036 |
ctttgaagagtatgattgccgtgtcaaacttctacagaagaagcaatggaaagaggaattgagaaggatgagggagataaagaagaataaaggtaaatca |
11297937 |
T |
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| Q |
210 |
gaatatggctacccagaagaaggtgctcagaatatggaaagtccagatgcagtgccgactccattgcatgatatgatcatgccgctatcctttgat |
305 |
Q |
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| T |
11297936 |
gaatatggctacacagaagaaggtgctcagaatatggaaagtccaaatgcagtgccgactccattgcatgatatgatcatgccgctatcctttgat |
11297841 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 112 - 193
Target Start/End: Original strand, 36608765 - 36608846
Alignment:
| Q |
112 |
ttgaagagtatgattaccgcgtcaaacttctagtgaagaagcaatggaaagaggaattgagaaggatgagggagataaagaa |
193 |
Q |
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|||| |||||||| ||||| || |||||| | |||||||||||||| |||||| |||| ||||||||| ||||| ||||| |
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| T |
36608765 |
ttgaggagtatgagtaccgagtgaaacttttgcagaagaagcaatggagagaggagttgaaaaggatgagagagatgaagaa |
36608846 |
T |
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