View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719_high_13 (Length: 298)
Name: NF5719_high_13
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 17 - 285
Target Start/End: Original strand, 34760242 - 34760508
Alignment:
| Q |
17 |
aatataaatcttcccaattttcttaaccaaatatagaaactcgttaatgtgcccgatttgttcattctggtatttccgtgagtaggactatggttgcttt |
116 |
Q |
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| T |
34760242 |
aatataaatcttcccaattttcttaaccaaatatagaaactcgttaatgtgcccgatttgttcattctgatatatccgtgagtaggactatggttgcttt |
34760341 |
T |
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| Q |
117 |
tcagcacaattcacagactgattattaacccatctattatactctttttactcaaaattataagcaaaagtaacaaactatgtaccaattaagaacagcg |
216 |
Q |
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| T |
34760342 |
tcagcacaattcacagactgattattaacccatctattatactctttttactc--aattataagcaaaagtaacaaactatgtaccaattaagaacggcg |
34760439 |
T |
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| Q |
217 |
attgtcctacatgtacagtggtaaaagactgcagagatatttgatatgttgggtcacgtgttcgatcct |
285 |
Q |
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| T |
34760440 |
gttgtcctacaagtacagtggtaaaagactgcagagatatttgatatgttgggtcacgtgttcgatcct |
34760508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 17 - 188
Target Start/End: Original strand, 34747785 - 34747954
Alignment:
| Q |
17 |
aatataaatcttcccaattttcttaaccaaatatagaaactcgttaatgtgcccgatttgttcattctggtatttccgtgagtaggactatggttgcttt |
116 |
Q |
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|||||||||||||||||||| |||||| |||| ||||||||||||||||||||| || ||||||||| ||| ||||||||||||| |||||||||||| |
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| T |
34747785 |
aatataaatcttcccaatttgcttaactgaataaagaaactcgttaatgtgcccgtttagttcattctaatatatccgtgagtaggattatggttgcttt |
34747884 |
T |
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| Q |
117 |
tcagcacaattcacagactgattattaacccatctattatactctttttactcaaaattataagcaaaagta |
188 |
Q |
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| T |
34747885 |
tcagtgcaattcatagactgattattaacccatccattatactctttttactc--aattataagcacaagta |
34747954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 34752389 - 34752451
Alignment:
| Q |
22 |
aaatcttcccaattttcttaaccaaatatagaaactcgttaatgtgcccgatttgttcattct |
84 |
Q |
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|||||||| |||| | |||||||||| |||||||| | ||||||||||| ||| ||||||||| |
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| T |
34752389 |
aaatcttctcaatctgcttaaccaaaaatagaaacccattaatgtgcccaattagttcattct |
34752451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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