View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719_high_19 (Length: 209)
Name: NF5719_high_19
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719_high_19 |
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| [»] chr7 (4 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 205; Significance: 1e-112; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3679385 - 3679177
Alignment:
| Q |
1 |
agtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaagaagaagtagtgtatagttcagga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3679385 |
agtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaagaagaagtagtgtatagttcagga |
3679286 |
T |
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| Q |
101 |
atgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttttgatgaatactcttcgtacaaatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
3679285 |
atgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgttttttatgaatactcttcgtacaaatat |
3679186 |
T |
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| Q |
201 |
cattatcct |
209 |
Q |
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||||||||| |
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| T |
3679185 |
cattatcct |
3679177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3693909 - 3693707
Alignment:
| Q |
1 |
agtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaag-aagaagtagtgtatagttcagg |
99 |
Q |
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||||||| | |||||||| |||| |||||||| ||||||||||||||||||| || ||||||||||| ||| |||||| ||||||| ||||||| |
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| T |
3693909 |
agtactgttgtttatcaaaaacacacctcatcatgatcttcccgaatcgatac---gt----gttgtaattataaaggaagaagcagtgtatggttcagg |
3693817 |
T |
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| Q |
100 |
aatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttttgatgaatactcttcgtacaaata |
199 |
Q |
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| T |
3693816 |
aatgagcggaaatcacagtgtgtatgtgttataagaaaccaatcacttactgccaaatcagttcgtgatgcgttattgatcaatattcttcgtagaaata |
3693717 |
T |
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| Q |
200 |
tcattatcct |
209 |
Q |
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|||||||||| |
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| T |
3693716 |
tcattatcct |
3693707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 3686142 - 3685940
Alignment:
| Q |
1 |
agtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaag-aagaagtagtgtatagttcagg |
99 |
Q |
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||||||||||||||||||||||| |||||| ||||||||||||||||||||| || || |||||||| ||| ||||||| |||||||||||| | |
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| T |
3686142 |
agtactgctatttatcaagaacacacctcataacgatcttcccgaatcgatac---gt----gtggtaattataaaggaagaagttgtgtatagttcatg |
3686050 |
T |
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| Q |
100 |
aatgagcggaaatcacagcgtgtatgtgttataagaaaccaatcacttgctgccaaatcaattcgtgatgcgtttttgatgaatactcttcg-tacaaat |
198 |
Q |
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|||||||||||||||||| |||||||||||| ||| |||||||||||| |||||| |||| |||| |||||||| |||| ||| |||||| | ||||| |
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| T |
3686049 |
aatgagcggaaatcacagtgtgtatgtgttaaaag-aaccaatcacttactgccacatcagttcgcgatgcgttcgtgatctatattcttcgatgcaaat |
3685951 |
T |
|
| Q |
199 |
atcattatcct |
209 |
Q |
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||||||||||| |
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| T |
3685950 |
atcattatcct |
3685940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 3675705 - 3675579
Alignment:
| Q |
1 |
agtactgctatttatcaagaacatgcctcatcacgatcttcccgaatcgatacaccgtacacgttgtaattattaag-aagaagtagtgtatagttcagg |
99 |
Q |
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|||||| |||||||||||||||| |||| || ||||||||||||||||| | || ||||||||||| ||| |||||| |||||||||||| || |
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| T |
3675705 |
agtactactatttatcaagaacacatctcaccatgatcttcccgaatcgattc---gt----gttgtaattataaaggaagaagcagtgtatagttctgg |
3675613 |
T |
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| Q |
100 |
aatgagcggaaatcacagcgtgtatgtgttataa |
133 |
Q |
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||||||||||||| ||||| ||| ||||||||| |
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| T |
3675612 |
aatgagcggaaatgacagcacgtaagtgttataa |
3675579 |
T |
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