View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719_high_8 (Length: 410)
Name: NF5719_high_8
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 4 - 394
Target Start/End: Complemental strand, 21243189 - 21242798
Alignment:
| Q |
4 |
ggagcagcac-agacccaatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccaca |
102 |
Q |
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| T |
21243189 |
ggagcagcaccagacccaatactcttcaaagaagaaacatcatatttcccaaccacactctgtttcgctaaagcaagaatcatcggtggcacaacccaca |
21243090 |
T |
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| Q |
103 |
agttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgt |
202 |
Q |
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| T |
21243089 |
agttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgt |
21242990 |
T |
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| Q |
203 |
tataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgat |
302 |
Q |
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| T |
21242989 |
tataaccgccaatccaaacacatgaaacatcggtaaaacgcagatgaacacattgtttaattccccagctaaatcatcatccatgtttatcatcaacgac |
21242890 |
T |
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| Q |
303 |
gctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgttt |
394 |
Q |
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| T |
21242889 |
gctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcggtctgttt |
21242798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 21258939 - 21258587
Alignment:
| Q |
18 |
ccaatactcttcagagaagaaacatcatatttcccaaccacactttgtttcgctaaagcaagaatcatcggtggcacaacccacaagttcgtcactttat |
117 |
Q |
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| T |
21258939 |
ccaatactcttcaacgaagaaacatcatatttcccaaccacactctgtttcgccaaagcaagattcatcgatggcacaacccacaaagttgtcactctat |
21258840 |
T |
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| Q |
118 |
acttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgcgtatgttataaccgccaatcc |
217 |
Q |
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| T |
21258839 |
acttttcaatcaccttcaaaaa-ccctctaactcaaatctccccgttgaaaccaccgcacttcctctccttagctgcgcgtatgttataaccgccaatct |
21258741 |
T |
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| Q |
218 |
aaacacatgaaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatcatcaacgatgctgcgatgaagttc |
317 |
Q |
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| T |
21258740 |
aaacacatgaaacatcggtaaaacgcagaggaacac---atttaattcccctgctaaatcatcatccatgtttatcatcaatgaagtcgcgatgaagttc |
21258644 |
T |
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| Q |
318 |
ttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagt |
374 |
Q |
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| T |
21258643 |
ttgtgggtgagtatcacacctttgctcactcctgtagttcctgatgagtacagaagt |
21258587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 97 - 386
Target Start/End: Complemental strand, 21254357 - 21254066
Alignment:
| Q |
97 |
cccacaagttcgtcactttatacttctcaatcaccttcaaaaaaccctctaactcaaacctccccatcgaaaccacggtacttcctctccttagctgtgc |
196 |
Q |
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||||||| ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||| | |||||||| |||||||||||||||||||| || |
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| T |
21254357 |
cccacaaattcgtcactctatgcttctcaatcaccttcaaaaa-ccctctaactcaaacctccccgttgaaaccaccgtacttcctctccttagctgcgc |
21254259 |
T |
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| Q |
197 |
gtatgttataaccgccaatccaaacacatg---aaacatcggtaaaacgcagatgaacacgttgtttaattccccagctaaatcatcatccatgtttatc |
293 |
Q |
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||||||||||||| |||||| ||||||||| |||||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| ||| |
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| T |
21254258 |
gtatgttataaccaccaatctaaacacatgaataaacatcggtaaaacgcagaagaacacgttgtttaattcccctgctaaatcatcgtccatgttaatc |
21254159 |
T |
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| Q |
294 |
atcaacgatgctgcgatgaagttcttgtgtgtgagaatcacacctttgctcactcctgtagttcctgatgagtacaaaagtgccgctgtatcg |
386 |
Q |
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|| |||| | || |||| ||||||||| || || ||||| || |||||||||||||| ||||||||||||||||| | |||||||||||| |
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| T |
21254158 |
attaacgccaccgcaatgacgttcttgtgggtaagtatcacgcccttgctcactcctgttgttcctgatgagtacaacaaagccgctgtatcg |
21254066 |
T |
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