View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719_low_10 (Length: 406)
Name: NF5719_low_10
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719_low_10 |
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| [»] scaffold0013 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 1e-94; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 117 - 323
Target Start/End: Complemental strand, 9536086 - 9535879
Alignment:
| Q |
117 |
aggaagttcgctagaggatgggatgaatagcgtttttcgtttt-caaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgttt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
9536086 |
aggaagttcgctagaggatgggatgaatagcgtttttcgtttttcaattttttttaggaatacatggattaaaaagagtatgactattgaatctgtgttt |
9535987 |
T |
|
| Q |
216 |
gatgatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatatttaatcttttagaacaaatcaacaatcaatat |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9535986 |
gatgatgataaaaaactaagacaatgaatatcaaatatgattcaaaggtgaattgagaatttaaatatttaatcttttagaacaaatcaacaatcaatac |
9535887 |
T |
|
| Q |
316 |
aaatacat |
323 |
Q |
| |
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|||||||| |
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| T |
9535886 |
aaatacat |
9535879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 86
Target Start/End: Complemental strand, 9536157 - 9536084
Alignment:
| Q |
13 |
atgttatgcatgaaagcagctggggcgttttataaccgagtgtccaaataggaaaggcaaaagtgggactgagg |
86 |
Q |
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| T |
9536157 |
atgttatgcatgaaagcagctggggcattttataaccgagtgtccaaataggaaaggcaaaagtgggactgagg |
9536084 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 325 - 384
Target Start/End: Complemental strand, 9535820 - 9535761
Alignment:
| Q |
325 |
ttctgttagatgtggaaggatttccaacaacacctctactcagaattttacattgattaa |
384 |
Q |
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| T |
9535820 |
ttctgctagatgtggaaggatttccaacaacacctctactcagaattttacattgattaa |
9535761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 167 - 314
Target Start/End: Complemental strand, 27272356 - 27272207
Alignment:
| Q |
167 |
ttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtg |
265 |
Q |
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|||||| ||| | |||||||| ||||||||||||||||||| ||||| || ||||||| |||| ||| |||||||| |||||||| |||||||| || |
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| T |
27272356 |
ttttgcaaaagcgtggattaacaagagtatgactattgaatttgtgtgcgacaatgataacaaaattaaaacaatgaaaatcaaataatattcaaagctg |
27272257 |
T |
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| Q |
266 |
aattgaga-atttaaatatttaatcttttagaacaaatcaacaatcaata |
314 |
Q |
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| T |
27272256 |
aattgagaggttcaaataatgaatcttatgaaacaaatcaataatcaata |
27272207 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 7e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 94 - 270
Target Start/End: Complemental strand, 16192330 - 16192154
Alignment:
| Q |
94 |
tgttagtctatatgacaaactataggaagttcgctagaggatgggatgaatagcgtttttcgtt-ttcaaaattttttgcgaaaacatggattaaaaaga |
192 |
Q |
| |
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|||||||||||||||||||||| ||||| ||||||||| || | |||||| ||||||||| ||||||| |||||| ||||| |||||||| |||| |
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| T |
16192330 |
tgttagtctatatgacaaactaa--gaagtgcgctagaggggggtgtcaatagcatttttcgttcttcaaaaggttttgcaaaaacgtggattaacaaga |
16192233 |
T |
|
| Q |
193 |
gtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattg |
270 |
Q |
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|||||||||| |||| |||| | |||||||||| |||| || |||||||||||||||||| |||||||| |||||||| |
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| T |
16192232 |
gtatgactatcgaatttgtgcgtaatgatgataacaaaattaggacaatgaatatcaaataagattcaaatgtgaattg |
16192154 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 314
Target Start/End: Complemental strand, 17350117 - 17349939
Alignment:
| Q |
140 |
tgaatagcgtttttcgtttt-caaaattttttgcgaaaacatggattaa-aaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaaga |
236 |
Q |
| |
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|||||| ||||||||||||| ||||| |||||| ||| | |||||||| |||||||||||||||||||| |||| || ||||||||| |||| ||||| |
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| T |
17350117 |
tgaataacgtttttcgtttttcaaaagattttgcaaaagcgtggattaacaaagagtatgactattgaatttgtgcttagtgatgataacaaaattaaga |
17350018 |
T |
|
| Q |
237 |
caatgaatatcaaatatgattcaaaggtgaattgagaa-tttaaatatttaatcttttagaacaaatcaacaatcaata |
314 |
Q |
| |
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||||||| || || || ||||||||||||||||||||| || ||||| | | |||| || | |||||||||||||||| |
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| T |
17350017 |
caatgaaaataaactaagattcaaaggtgaattgagaagttcaaataatgactcttataaagaaaatcaacaatcaata |
17349939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 156 - 291
Target Start/End: Original strand, 6104 - 6241
Alignment:
| Q |
156 |
ttttcaaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatg |
254 |
Q |
| |
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||||||||| |||||||||||| |||||| | || | |||||||||||||| |||| |||||||||||| |||| |||||||||||||| |||||| | |
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| T |
6104 |
ttttcaaaaggttttgcgaaaacgtggattcacaaaactatgactattgaatttgtgcatgatgatgataacaaaattaagacaatgaataacaaataag |
6203 |
T |
|
| Q |
255 |
attcaaaggtgaattgaga-atttaaatatttaatctt |
291 |
Q |
| |
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|||||||| | |||||||| ||||||||| | |||||| |
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| T |
6204 |
attcaaagctaaattgagagatttaaataatgaatctt |
6241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 271
Target Start/End: Original strand, 23142308 - 23142442
Alignment:
| Q |
140 |
tgaatagcgtttttcg--ttttcaaaattttttgcgaaaacatggattaaaaagagtatgactattgaatctgtgtttgatgatgataa-aaaactaaga |
236 |
Q |
| |
|
|||||||||||||||| |||| ||| ||||||||||| | |||||||| | |||| || |||||||| |||| |||||||||||| |||| ||||| |
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|
| T |
23142308 |
tgaatagcgtttttcggtttttaaaaggtttttgcgaaagcgtggattaactaaagtacgattattgaatttgtgcgtgatgatgataacaaaattaaga |
23142407 |
T |
|
| Q |
237 |
caatgaatatcaaatatgattcaaaggtgaattga |
271 |
Q |
| |
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|||||||||||||||| ||||||||| |||||||| |
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| T |
23142408 |
caatgaatatcaaataagattcaaagttgaattga |
23142442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 273
Target Start/End: Original strand, 3462253 - 3462372
Alignment:
| Q |
156 |
ttttcaaaattttttgcgaaaacatggattaaaaagagtatgacta-ttgaatctgtgtttgatgatgataaaaaact-aagacaatgaatatcaaatat |
253 |
Q |
| |
|
||||||||| |||||||||| | | |||||| ||||||||||||| ||| || |||| |||||||||||| ||| | |||||||||||||||||||| |
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|
| T |
3462253 |
ttttcaaaaggttttgcgaaagcgtagattaacaagagtatgactaattgcatttgtgcgtgatgatgataacaaaatcaagacaatgaatatcaaataa |
3462352 |
T |
|
| Q |
254 |
gattcaaaggtgaattgaga |
273 |
Q |
| |
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|||| ||||||||||||||| |
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| T |
3462353 |
gatttaaaggtgaattgaga |
3462372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 323
Target Start/End: Complemental strand, 17279294 - 17279071
Alignment:
| Q |
94 |
tgttagtctatatgacaaactataggaagttcgctagaggatgggatgaatagcgttttt-cgttttcaaaattttttgcgaaaacatggattaaaaaga |
192 |
Q |
| |
|
||||||| |||||||||||||| |||||| ||||||| | ||| |||||| ||||||| | |||| |||| |||| ||||| | ||||| | || | |
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|
| T |
17279294 |
tgttagtgtatatgacaaacta--ggaagtgcgctagatg--ggggtgaataacgttttttcatttttaaaaggttttacgaaagcttggataaccaaaa |
17279199 |
T |
|
| Q |
193 |
gtatgactattgaatctgtgtttgatgatgataa-aaaactaagacaatgaatatcaaatatgattcaaaggtgaattgaga-atttaaatatttaatct |
290 |
Q |
| |
|
||||||||||||||| ||||| || ||||||||| |||| |||||||||| |||||||||||||| |||||||||| || ||||| | ||||| |
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|
| T |
17279198 |
gtatgactattgaatttgtgtgtgttgatgataacaaaattaagacaatg-----ttaatatgattcaaagctgaattgagaggttcaaataatgaatct |
17279104 |
T |
|
| Q |
291 |
tttagaacaaatcaacaatcaatataaatacat |
323 |
Q |
| |
|
| | || || |||||||||||||| |||||||| |
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|
| T |
17279103 |
tatggagcatatcaacaatcaatacaaatacat |
17279071 |
T |
|
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