View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719_low_12 (Length: 348)
Name: NF5719_low_12
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719_low_12 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 7 - 348
Target Start/End: Complemental strand, 33440265 - 33439924
Alignment:
| Q |
7 |
attgtactctcccagatgtgatactcaaagaatcgacgaggaatccattgacacctgtaatcaatacacttatgaataaaatatttgttggttccacgtc |
106 |
Q |
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| T |
33440265 |
attgtactctcccagatgtgatactcaaagaatcaacgaggaatccattgacacctgtaatcaatacacttatgaataaaatatttgttggttccacgtc |
33440166 |
T |
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| Q |
107 |
ttggacaattgtcatcagttttacatataagttcacctgtttaaatttcaaagataataaaataacattactaaaacatataagtggttgtgtaggaact |
206 |
Q |
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| T |
33440165 |
ttggacaattgtcatcagttttacatataagttcacctgtttaaatttcaaagataataaaataacattactaaaacatagaaatcgttgtgtaggaact |
33440066 |
T |
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| Q |
207 |
aggaagtgaagaagaaaattcaggaaaaaggatgaaagaatatcgtacgataatattcatttgcaatgaaaagaattaaactcatagcataaataaattt |
306 |
Q |
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| T |
33440065 |
aagaagtgaagaagaaaattctggaaaaaggatgaaagaatatcttacgataatgttcatttgcaatgaaaagaattaaactcatagcataaataaattt |
33439966 |
T |
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| Q |
307 |
gattattgcagacatatttttcatcgtaaaacatagaatatt |
348 |
Q |
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| T |
33439965 |
gattattgcagacatatttttcatcgtaaaacatagaatatt |
33439924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 143 - 328
Target Start/End: Original strand, 33163826 - 33164011
Alignment:
| Q |
143 |
ctgtttaaatttcaaagataataaaataacattactaaaacat-ataagtggttgtgtaggaactaggaagtgaag--aagaaaattcaggaaaaaggat |
239 |
Q |
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| T |
33163826 |
ctgtataaattttaaagataataaaataacattacctagacatgataaatggtggcgtacgaactaagaagtaaaggaaaaaaaatt---gaaaaaggat |
33163922 |
T |
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| Q |
240 |
gaaagaatatcgtacgataatattcatttgcaatgaaaagaattaaactcatagcataaataaatttgattattgcagacatatttttc |
328 |
Q |
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| T |
33163923 |
gaaaaaacgtcttacgatgaaattccatcccaatgaaaagaattaaactcatggcataaataaatttgatagttgcagacatatttttc |
33164011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 153 - 185
Target Start/End: Complemental strand, 31337553 - 31337521
Alignment:
| Q |
153 |
ttcaaagataataaaataacattactaaaacat |
185 |
Q |
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| T |
31337553 |
ttcaaagataataaaataatattactaaaacat |
31337521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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