View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719_low_15 (Length: 283)
Name: NF5719_low_15
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719_low_15 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 9396842 - 9396560
Alignment:
| Q |
1 |
acagaacatgaaattatgtcccttaaaaatgcaataaatgaaacctaaatcatcaaggtgtatcaatagaacatcaaagtatattcaatgggtgacataa |
100 |
Q |
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| T |
9396842 |
acagaacatgaaattatgtcccttaaaaatgcaataaatgaaacctaaatcatcaaggtgtatcaatagaacatcaaagtatattcaatgggtgacataa |
9396743 |
T |
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| Q |
101 |
cttataatacaacatgatacatagagtaattccgacgtgaatataaagtttaaatannnnnnncaacccagcattaataaacatataagtatagaagtta |
200 |
Q |
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| T |
9396742 |
cttataatacaacatgatacatagagtaattccgacgtgaatataaagtttaaatatttttttcaacccagcattaataaacatataagtatagaagtta |
9396643 |
T |
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| Q |
201 |
ttttcgataaaaagtactacttcggaatcgaatataaacnnnnnnnnnnngttaaacaaaattgatgtatttggttaaaaatt |
283 |
Q |
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| T |
9396642 |
ttttcgataaaaagtactacttcggaatcgaatataaacaaaaaaaaaaagttaaacaaaattgatgtatttggttaaaaatt |
9396560 |
T |
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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 21 - 97
Target Start/End: Complemental strand, 28816413 - 28816337
Alignment:
| Q |
21 |
ccttaaaaatgcaataaatgaaacctaaatcatcaaggtgtatcaatagaacatcaaagtatattcaatgggtgaca |
97 |
Q |
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| T |
28816413 |
ccttagaaatgcaattcataaaacctaaatcatcaaggtgtatgaatagaacaacatagtatgttcaatggctgaca |
28816337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 45
Target Start/End: Complemental strand, 31587670 - 31587629
Alignment:
| Q |
4 |
gaacatgaaattatgtcccttaaaaatgcaataaatgaaacc |
45 |
Q |
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| T |
31587670 |
gaacatgaaattatgtccctaagaaatgcaataattgaaacc |
31587629 |
T |
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