View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5719_low_2 (Length: 838)

Name: NF5719_low_2
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5719_low_2
NF5719_low_2
[»] chr6 (1 HSPs)
chr6 (1-832)||(3972863-3973706)


Alignment Details
Target: chr6 (Bit Score: 665; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 665; E-Value: 0
Query Start/End: Original strand, 1 - 832
Target Start/End: Original strand, 3972863 - 3973706
Alignment:
Q  1 ctgggccccaccaccaccatacccagatccatattcaccctcttgcttcctcccaccatacccagatccaatttcagattcttgaccaccgtacccagat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3972863 ctgggccccaccaccaccatacccagatccatattcaccctcttgcttcctcccaccatacccagatccaatttcagattcttgaccaccatacccagat 3972962  T
Q  101 ccttgtttcctcccatnnnnnnnnnnnnnnnnnnnngattcagggtgaaaactagaaggtgcaggtctaggtttcggtctcacatagctactatactcag 200  Q
    ||||||||||||||||                    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3972963 ccttgtttcctcccatacccaccaccaccatcaccagattcagggtgaaaactagaaggtgcaggtctaggtttcggtctcacatagctactatactcag 3973062  T
Q  201 tagcaagagcttcatcaccataagcagaaggttgagcataagattcaaattgaggacgatcataatcaaaatcattgtttgatgaacctgatgggtaaca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3973063 tagcaagagcttcatcaccataagcagaaggttgagcataagattcaaattgaggacgatcataatcaaaatcattgtttgatgaacctgatgggtaaca 3973162  T
Q  301 tgtttcatcggaaggtggaattggtctaccgtaggtaaggtgaatgtcgtatccaccaccgtatggtgttggatcgtattcgtcgaaatcatcgacactt 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3973163 tgtttcatcggaaggtggaattggtctaccgtaggtaaggtgaatgtcgtatccaccaccgtatggtgttggatcgtattcgtcgaaatcatcgacactt 3973262  T
Q  401 tcgtcgccgtttccgccacgagtgaagtatgacattgtttcttgatcggnnnnnnnggttcagcgaattgaataaggatgatgaatttcaggatctaaag 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||    
T  3973263 tcgtcgccgtttccgccacgagtgaagtatgacattgtttcttgatcggtttttttggttcagcgaattgaataaggatgatgaatttcaggatctaaag 3973362  T
Q  501 tgttatttatacttgtctgagaaaaatcagtggttgaaagttgaaactatctctatcggacaagtggcgaggatccgtagtcttcgtgagtttaactcag 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || ||||||||||||||||||    
T  3973363 tgttatttatacttgtctgagaaaaatcagtggttgaaagttgaaactatctctattggacaagtggcgaggatccgtcgttttcgtgagtttaactcag 3973462  T
Q  601 ttgaagttgatagatacactacgtggatgatatgaggttcaaaccccgaccaccacnnnnnnntaatggcgaggatccatagtcatttggatcccagaac 700  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||       ||||||||||||||||||||  |||||||||||||||    
T  3973463 ttgaagttgatagatacactgcgtggatgatatgaggttcaaaccccgaccaccacaaaaaaataatggcgaggatccatagtagtttggatcccagaac 3973562  T
Q  701 gtttaaagagttacaaatagtcgataaatttacgaaattttaaaataatattcgattgtgcactttgatcaaa------------tagtggagtataggt 788  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||    
T  3973563 gtttaaagagttacaaatagtccataaatttacgaaattttaaaataatattcgattgtgcactttgatcaaaatagtaccaggttagtggagtataggt 3973662  T
Q  789 tgttgttactaactgttgcattggaggttaatattgatgatgtc 832  Q
    ||||||||||||||||||||||| ||||||||||||||||||||    
T  3973663 tgttgttactaactgttgcattgcaggttaatattgatgatgtc 3973706  T

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