View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5719_low_4 (Length: 803)

Name: NF5719_low_4
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5719_low_4
NF5719_low_4
[»] chr7 (2 HSPs)
chr7 (111-802)||(25145650-25146339)
chr7 (17-122)||(25145501-25145606)


Alignment Details
Target: chr7 (Bit Score: 577; Significance: 0; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 111 - 802
Target Start/End: Original strand, 25145650 - 25146339
Alignment:
Q  111 tttgaaatttttaatcttacttttttctcaagtaaatatatgacatattacactttgtgcttcatccaaatttctctgctacatttactataacatatag 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||    
T  25145650 tttgaaatttttaatcttacttttttctcaagtaaatatatgacatattacactttgtgcttcatccaaatttgtctgcttcatttactataacatatag 25145749  T
Q  211 tctttataacttttaggtcaagaattgtagaaagttttaaagggaattnnnnnnnnnnnnnnnnnnnnnnttatttcttatataaggtactctaaccaat 310  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||||||||||||    
T  25145750 tcttaataacttttaggtcaagaattgtagaaagttttaaagggaattaaaacaaaaaaaagaaatat--ttatttcttatataaggtactctaaccaat 25145847  T
Q  311 gaaaaatggagaacatgtataatttcttagaggagaaaacatgatagagagacgttaaaattttgtattatttggttgaaggttccaaaaagcttgaagc 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25145848 gaaaaatggagaacatgtataatttcttagaggagaaaacatgatagagagacgttaaaattttgtattatttggttgaaggttccaaaaagcttgaagc 25145947  T
Q  411 tgaaaattgaagcacaaggaaagtatctagccagaattggacaaagtaatcaaatcagaaatataacaagaaaagcttgcaagccttttgtcggtaaagc 510  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  || |||||||||||||||||||||||||| ||||||||    
T  25145948 tgaagattgaagcacaaggaaagtatctagccagaattggacaaagtaatcaaatcagaacaattacaagaaaagcttgcaagccttttgttggtaaagc 25146047  T
Q  511 aacccctttgccctctctttccgaggaatctgaatcctttaaaacacaatccgacgaagaacagcgaacagcgaaaaagaaaaaggtctcaaatgagaat 610  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||    
T  25146048 aacccctttgccctctctttccgaggaatctgaatcctttaaaacacaatccgacgaagaacatcgaacagcgaaaaagaaaaaggtcacaaatgagaat 25146147  T
Q  611 gtttttcctacaggttttgaactgggatcatccactacctcggaattcagcaaccaaacctggaacctttcttggagtcagctggctgaagcaacctacc 710  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25146148 gtttttcctacaggttttgaactgggatcatccactacctcggaattcagcaaccaaacctggaacctttcttggagtcagctggctgaagcaacctacc 25146247  T
Q  711 aatcacctttggtgcctagtttcttattataggttttgtataattagaataactgtttgccctaataagagagttgatgatgatgtccatct 802  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  25146248 aatcacctttggtgcctagtttcttattataggttttgtataattagaataactgtttgccctaataagagagttgatgatgatgttcatct 25146339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 98; E-Value: 8e-48
Query Start/End: Original strand, 17 - 122
Target Start/End: Original strand, 25145501 - 25145606
Alignment:
Q  17 aaagttgaggtattttataatgttttacaaagtgtgaattatccaatttattttagtaaattttcacaaacaaatttaatactttgttgacaaatttgaa 116  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25145501 aaagttgaggtattttataatgtttgacaaagtgtgaattatccaatttattttagtaaatttacacaaacaaatttaatactttgttgacaaatttgaa 25145600  T
Q  117 attttt 122  Q
    ||||||    
T  25145601 attttt 25145606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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