View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5719_low_7 (Length: 431)
Name: NF5719_low_7
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5719_low_7 |
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| [»] scaffold0983 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 19 - 216
Target Start/End: Original strand, 30082333 - 30082533
Alignment:
| Q |
19 |
aggacagttataaataaagggtaataagggaagatggtttgaaaaacaaaattgaaattgagaatcgattttggcaaaagcagaagcttcaaatcatagc |
118 |
Q |
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| T |
30082333 |
aggacagttataaataaagggtaataagggaagatggtttgaaaaacaaaattgaaattgagaatcgattttggcaaacgcagaagctccaaatcatagc |
30082432 |
T |
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| Q |
119 |
ttctgatcaaccgtgagtttgagtatg---gaagcgattcatatggatgaaagtcaaacatgacagtttttcgtcaaactgtgtttgactacccaaaacg |
215 |
Q |
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| T |
30082433 |
ttctggtcaaccgtgagtttgggtatggaagaagcaattcatatggatgaaagtcaaacatgacagtttttcgtcaaactgcgtttgactacccaaaacg |
30082532 |
T |
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| Q |
216 |
c |
216 |
Q |
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| T |
30082533 |
c |
30082533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 314 - 421
Target Start/End: Original strand, 30082807 - 30082914
Alignment:
| Q |
314 |
agttatgaagtttaatttatgagctattccatgcgttatgttagcaaaatggtgggacactaaacggagcctaaagtttcaaattctgccaagcttctaa |
413 |
Q |
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| T |
30082807 |
agttatgaagtttaatttatgagctattccatgcgttatgttagcaaaatggtgggacactaaacggagcctaaagtttcaaattctgccaagcttctga |
30082906 |
T |
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| Q |
414 |
tacctatg |
421 |
Q |
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|||||||| |
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| T |
30082907 |
tacctatg |
30082914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 44224598 - 44224536
Alignment:
| Q |
142 |
tatggaagcgattcatatggatgaaagtcaaacatgacagtttttcgtcaaactgtgtttgac |
204 |
Q |
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| T |
44224598 |
tatggaagcgattcatatggatgaaagccaaacatgacactttttagtcaaactgtgtttgac |
44224536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 52967504 - 52967568
Alignment:
| Q |
57 |
ttgaaaaacaaaattgaaattgagaatcgattttggcaaaagcagaagcttcaaatcatagcttc |
121 |
Q |
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| T |
52967504 |
ttgaaaaacaaaactaaaacttagaatcgatttaggcaaccgcagaagctccaaatcgtagcttc |
52967568 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 40884755 - 40884659
Alignment:
| Q |
26 |
ttataaataaagggtaataagggaagatggt-ttgaaaaacaaaattgaaattgagaatcgattttggcaaaagcagaagcttcaaatcatagcttc |
121 |
Q |
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| T |
40884755 |
ttataaaggaagggtaataagggaagttggtcttggaaaacaaaattgaaactcagaatcgattctgcctaacgcagaagcttcaaatcgtagcttc |
40884659 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 26 - 185
Target Start/End: Original strand, 29749328 - 29749488
Alignment:
| Q |
26 |
ttataaataaagggtaataagggaagatggt-ttgaaaaacaaaattgaaattgagaatcgattttggcaaaagcagaagcttcaaatcatagcttctga |
124 |
Q |
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| T |
29749328 |
ttataaaggaaggttaataagggaatttggtattggaaaacaaaattaaaactcataatcgattctgcgtaatgcaaatgctccaaatcatagcttcata |
29749427 |
T |
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| Q |
125 |
tcaaccgtgagtttgagtatggaagcgattcatatggatgaaagtcaaacatgacagtttt |
185 |
Q |
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| T |
29749428 |
tccactgtgatcttggggatggaagcggttcatatgtatgaaagccaaacataaaagtttt |
29749488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0983 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0983
Description:
Target: scaffold0983; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 178
Target Start/End: Original strand, 2839 - 2992
Alignment:
| Q |
26 |
ttataaataaagggtaataagggaagatggt-ttgaaaaacaaaattgaaattgagaatcgattttggcaaaagcagaagcttcaaatcatagcttctga |
124 |
Q |
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||||||| ||||||||||||||||| |||| ||| ||||| ||||||||| | |||||||||| || | || ||||||||| ||||| ||||||| || |
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| T |
2839 |
ttataaaggaagggtaataagggaagttggtcttggaaaactaaattgaaactcagaatcgattctgcctaacgcagaagctccaaattgtagcttccga |
2938 |
T |
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| Q |
125 |
tcaaccgtgagtttgagtatggaagcgattcatatggatgaaagtcaaacatga |
178 |
Q |
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| T |
2939 |
tccaccgcaattttggggatggaagcaattcaggtgaatgcaagccaaacatga |
2992 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 57 - 121
Target Start/End: Original strand, 4954736 - 4954800
Alignment:
| Q |
57 |
ttgaaaaacaaaattgaaattgagaatcgattttggcaaaagcagaagcttcaaatcatagcttc |
121 |
Q |
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| T |
4954736 |
ttgaaaaacaaaactaaaacttagaatcgatttaggcaaccgcagaagctccaaatcgtagcttc |
4954800 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 61 - 121
Target Start/End: Complemental strand, 28640890 - 28640830
Alignment:
| Q |
61 |
aaaacaaaattgaaattgagaatcgattttggcaaaagcagaagcttcaaatcatagcttc |
121 |
Q |
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||||||||| | ||| | ||||||||||| ||||| ||||||||| |||||||||||||| |
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| T |
28640890 |
aaaacaaaactaaaacttagaatcgatttaggcaaccgcagaagctccaaatcatagcttc |
28640830 |
T |
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