View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5719_low_8 (Length: 419)

Name: NF5719_low_8
Description: NF5719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5719_low_8
NF5719_low_8
[»] chr2 (4 HSPs)
chr2 (20-411)||(14735424-14735818)
chr2 (296-347)||(17303234-17303285)
chr2 (20-52)||(14742251-14742283)
chr2 (296-347)||(5887909-5887960)
[»] chr7 (6 HSPs)
chr7 (50-347)||(44629261-44629550)
chr7 (318-392)||(47520480-47520555)
chr7 (98-242)||(26074991-26075141)
chr7 (98-242)||(26098778-26098928)
chr7 (240-346)||(8061304-8061412)
chr7 (116-227)||(44598584-44598696)
[»] chr3 (3 HSPs)
chr3 (50-392)||(4221063-4221403)
chr3 (50-89)||(145493-145532)
chr3 (98-227)||(29438422-29438550)
[»] chr1 (3 HSPs)
chr1 (58-392)||(23825919-23826242)
chr1 (150-242)||(10370929-10371022)
chr1 (50-89)||(14876805-14876844)
[»] chr6 (2 HSPs)
chr6 (65-223)||(32786643-32786794)
chr6 (98-182)||(14533700-14533784)
[»] chr5 (4 HSPs)
chr5 (50-188)||(32633011-32633143)
chr5 (296-384)||(15974128-15974217)
chr5 (50-94)||(16717199-16717243)
chr5 (50-94)||(19645452-19645496)
[»] chr4 (8 HSPs)
chr4 (112-242)||(46851937-46852068)
chr4 (50-89)||(50070187-50070226)
chr4 (296-339)||(52797844-52797887)
chr4 (51-89)||(33226285-33226323)
chr4 (98-139)||(2930410-2930451)
chr4 (310-347)||(46852133-46852170)
chr4 (296-375)||(26494424-26494504)
chr4 (98-162)||(52490263-52490327)
[»] scaffold0325 (1 HSPs)
scaffold0325 (51-89)||(19783-19821)
[»] chr8 (2 HSPs)
chr8 (50-187)||(24888009-24888140)
chr8 (309-392)||(27084455-27084539)
[»] scaffold0060 (1 HSPs)
scaffold0060 (54-90)||(35934-35970)


Alignment Details
Target: chr2 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 14735424 - 14735818
Alignment:
Q  20 atcagtggattggtaaaactgttcaacctctttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataatt 119  Q
    ||||||||||||||||||||||||||||||||| || ||| |||||||||| |||| ||||||||||||| || ||| |||||||||| |||||||||||    
T  14735424 atcagtggattggtaaaactgttcaacctctttattaggg-tgctaaacttttatggaatatatattaaaaggaaacggtttcaagaaataacaataatt 14735522  T
Q  120 aataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttt---taataaaatatgtaaaagt 216  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||| ||||   |||||||||||||||||||    
T  14735523 aataactgacctagtgatataaattgttttaaaggagcaagaagatgtggattcgaatccccttaaaaacgtttttttttttaataaaatatgtaaaagt 14735622  T
Q  217 agaagattaaaaatgtaataagaagaagatgtgtaagtgttgaaccaacaacctttaacaacttacagtactccattttcactacaacaaccaaattcta 316  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| |||||||||||||||||    
T  14735623 agaagattaaatatgtaataagaagaagatgtgtaagtgttgaaccaacaacctttaacaatttacagtaccccatttccacaacaacaaccaaattcta 14735722  T
Q  317 attgatataatacacctaatatagtatataacaaaaatttgggg-atgtcatggcccctgtctgtccctaaagagattcaccaatgctcctttgct 411  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| ||| |||||||||||||||  |||||||| || ||||| || |||||||||    
T  14735723 attgatataatacacctaatatagtatataagaaaaatctggggaatgccatggcccctgtctgatcctaaagaaatccaccagtgatcctttgct 14735818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 296 - 347
Target Start/End: Original strand, 17303234 - 17303285
Alignment:
Q  296 cactacaacaaccaaattctaattgatataatacacctaatatagtatataa 347  Q
    ||||||||||||| |||| | |||||||| ||||||||||||||||||||||    
T  17303234 cactacaacaaccgaattgttattgatattatacacctaatatagtatataa 17303285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 52
Target Start/End: Original strand, 14742251 - 14742283
Alignment:
Q  20 atcagtggattggtaaaactgttcaacctcttt 52  Q
    |||||||||||||||||||||||||||||||||    
T  14742251 atcagtggattggtaaaactgttcaacctcttt 14742283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 347
Target Start/End: Complemental strand, 5887960 - 5887909
Alignment:
Q  296 cactacaacaaccaaattctaattgatataatacacctaatatagtatataa 347  Q
    |||| ||||||||||||| | |||||||| ||||||||||| ||||||||||    
T  5887960 cactgcaacaaccaaattattattgatattatacacctaatgtagtatataa 5887909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 50 - 347
Target Start/End: Complemental strand, 44629550 - 44629261
Alignment:
Q  50 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 149  Q
    ||||| |||||||| ||||||||||| |||||||||||||||||      |||||||||  |||||||||| |||||| ||||||| ||||||||| ||     
T  44629550 tttgtagggggtgccaaacttctatggaatatatattaaacggt------ttcaagaagatacaataattagtaactgacctagtggtataaattgtttg 44629457  T
Q  150 aaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttttaataaaatatgtaaaagtagaagattaaaaatgtaataagaagaagatgtg 249  Q
    ||| || ||||| ||||||| || ||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||| |||||| |||||||   ||||    
T  44629456 aaaagaacaagaggatgtgggtttgaatcccctcaaaaacgttttttttaatacaatatgtaaaagtagaagattaaatatgtaaaaagaaga---tgtg 44629360  T
Q  250 taagtgttgaaccaacaacctttaacaacttacagtactccattttc-actacaacaaccaaattctaattgatataatacacctaatatagtatataa 347  Q
     ||||||| ||||  | |||||||  || |||||| || ||  |||| ||| ||||| || || | |||||||||||||||||||||||||||||||||    
T  44629359 gaagtgtttaaccggcgacctttagtaaattacagcacccccctttccactgcaacagccgaaatttaattgatataatacacctaatatagtatataa 44629261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 318 - 392
Target Start/End: Original strand, 47520480 - 47520555
Alignment:
Q  318 ttgatataatacacctaatatagtatataac-aaaaatttggggatgtcatggcccctgtctgtccctaaagagat 392  Q
    ||||||||||||| ||||||||||||||||| |||| || ||||||||||||||||| | |||||||| |||||||    
T  47520480 ttgatataatacatctaatatagtatataacgaaaacttgggggatgtcatggccccagcctgtccctgaagagat 47520555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 26074991 - 26075141
Alignment:
Q  98 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaagg-----tt 192  Q
    ||||||||||||| |||||||| ||||| ||||||||| |||||||   ||||||||||||||| | ||||| || ||||| | | ||||| |     ||    
T  26074991 gtttcaagaagtatcaataatttataaccggcctagtggtataaatccttttaaaggagcaagagggtgtgggtttgaatcacttcaaaaatgttttttt 26075090  T
Q  193 gtttttaata-aaatatgtaaaagtagaagattaaaaatgtaataagaaga 242  Q
     ||||||||| |||||| |||  |||||||||| || ||||||||||||||    
T  26075091 ttttttaatacaaatatataatcgtagaagattgaatatgtaataagaaga 26075141  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 242
Target Start/End: Original strand, 26098778 - 26098928
Alignment:
Q  98 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaagg-----tt 192  Q
    ||||||||||||| |||||||| ||||| ||||||||| |||||||   ||||||||||||||| | ||||| || ||||| | | ||||| |     ||    
T  26098778 gtttcaagaagtatcaataatttataaccggcctagtggtataaatccttttaaaggagcaagagggtgtgggtttgaatcacttcaaaaatgttttttt 26098877  T
Q  193 gtttttaata-aaatatgtaaaagtagaagattaaaaatgtaataagaaga 242  Q
     ||||||||| |||||| |||  |||||||||| || ||||||||||||||    
T  26098878 ttttttaatacaaatatataatcgtagaagattgaatatgtaataagaaga 26098928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 240 - 346
Target Start/End: Complemental strand, 8061412 - 8061304
Alignment:
Q  240 agaagatgtgtaagtgttgaacca--acaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaata 337  Q
    |||||| ||| ||||||||||||   |||||||||| ||| |||  |||| |  ||| |||| ||||| ||||| ||| |||||||||||||||||||||    
T  8061412 agaagacgtggaagtgttgaacctgcacaacctttagcaatttatggtaccctctttccactgcaacatccaaaatctgattgatataatacacctaata 8061313  T
Q  338 tagtatata 346  Q
    |||||||||    
T  8061312 tagtatata 8061304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 116 - 227
Target Start/End: Complemental strand, 44598696 - 44598584
Alignment:
Q  116 aattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgttttt-aataaaatatgtaaaa 214  Q
    |||||||| |||||| |||| |||||| ||  |||||||||||||| || |||| || |||||||||  ||| | || ||||| |||| |||||| || |    
T  44598696 aattaatagctggccaagtggtataaaatgtgttaaaggagcaagaggaagtgggttcgaatcccctcgaaacgtttttttttaaatacaatatgcaata 44598597  T
Q  215 gtagaagattaaa 227  Q
     ||||||||||||    
T  44598596 atagaagattaaa 44598584  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 50 - 392
Target Start/End: Complemental strand, 4221403 - 4221063
Alignment:
Q  50 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 149  Q
    |||||||||||||| ||||||||||||||||||||||||||      ||||||||||||||| ||||||||||||| | ||||||| ||||||||  ||     
T  4221403 tttgttgggggtgccaaacttctatgaaatatatattaaac------agtttcaagaagtaataataattaataaccgacctagtggtataaattttttg 4221310  T
Q  150 aaaggagcaagaagatgtggattggaa-tccccttaaaaaggt----tgtttttaataaaatatgtaaaagtagaagattaaaaatgtaataagaagaag 244  Q
    ||| |||||||| ||||||| || ||| |||    ||||| ||    | ||||||||| ||| ||||||||||||||| |||| ||| || ||||||| |    
T  4221309 aaaagagcaagaggatgtgggttcgaaatccaaaaaaaaatgtgttttttttttaatacaatttgtaaaagtagaaga-taaatatgcaaaaagaagatg 4221211  T
Q  245 atgtgtaagtgttgaaccaacaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaatatagtata 344  Q
     |||| ||||||||||||| |||| |||| ||| ||||   || |||||| |||| ||||| |  || |||||||||| ||  |||||||||| |  |||    
T  4221210 -tgtggaagtgttgaaccagcaacttttagcaatttacgacaccccatttccactgcaacagctgaaatctaattgatttatgacacctaatacaaaata 4221112  T
Q  345 taa-caaaaatttggggatgtcatggcccctgtctgtccctaaagagat 392  Q
    |||  ||||  | ||||||| ||||||||||| ||||||||||||||||    
T  4221111 taaggaaaacctgggggatgccatggcccctgcctgtccctaaagagat 4221063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 145532 - 145493
Alignment:
Q  50 tttgttgggggtgctaaacttctatgaaatatatattaaa 89  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  145532 tttgttgggggtgccaaacttctatgtaatatatattaaa 145493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 227
Target Start/End: Complemental strand, 29438550 - 29438422
Alignment:
Q  98 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttt 197  Q
    |||||||| | || ||||||||||||  ||||| |||  |||||| || ||||||||||||||| || |||| || |||| |||||  ||| ||| ||||    
T  29438550 gtttcaagtattatcaataattaatagttggccaagttgtataaaatgttttaaaggagcaagaggaagtgggtttgaat-ccctttgaaacgttatttt 29438452  T
Q  198 taataaaatatgtaaaagtagaagattaaa 227  Q
     |||| |||||| || | ||||||||||||    
T  29438451 aaatacaatatgcaataatagaagattaaa 29438422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 58 - 392
Target Start/End: Complemental strand, 23826242 - 23825919
Alignment:
Q  58 gggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagc 157  Q
    |||||| ||||||||||| ||||||||||||||| |      ||||||||||||||||||||||||||||| |||||| ||||||||  || ||||||||    
T  23826242 gggtgccaaacttctatggaatatatattaaacgat------ttcaagaagtaacaataattaataactggtctagtggtataaattatttgaaaggagc 23826149  T
Q  158 aagaagatgtggattggaatccccttaaaaaggttgtttttaataaaatatgtaaaagtagaagattaaaaatgtaataagaagaagatgtgtaagtgtt 257  Q
    ||||   ||| | || ||||| | | |||||  || ||| ||||| || ||| |||| |||||||| ||| |||||| ||||||| ||   | || ||||    
T  23826148 aagagcgtgtaggtttgaatctcatcaaaaacattttttataatacaa-atggaaaaatagaagat-aaatatgtaaaaagaagatga---gaaaatgtt 23826054  T
Q  258 gaaccaacaacctttaacaacttacagtactccattttcactacaacaaccaaattctaattgatataatacacctaatatagtatataacaaaaatttg 357  Q
    ||||| ||||| |||||| | |||||| ||  ||| | ||||| ||||||  || | |||||| ||||||||||||||||||||||||||  ||||  ||    
T  23826053 gaaccgacaac-tttaacgatttacagcacctcatgtccactataacaactgaagtataattggtataatacacctaatatagtatataaagaaaacctg 23825955  T
Q  358 g-ggatgtcatggcccctgtctgtccctaaagagat 392  Q
    | ||||| |||||||||||  |||||||||||||||    
T  23825954 gaggatgacatggcccctgcttgtccctaaagagat 23825919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 150 - 242
Target Start/End: Complemental strand, 10371022 - 10370929
Alignment:
Q  150 aaaggagcaagaagatgtggattggaatccccttaaaaaggttgttttt-aataaaatatgtaaaagtagaagattaaaaatgtaataagaaga 242  Q
    |||||||||||  ||||||| ||  |||||||| ||||| ||| ||||| |||| |||||| ||||||| ||||||||| |||||| |||||||    
T  10371022 aaaggagcaagtggatgtgggttcaaatcccctcaaaaatgttttttttaaatataatatggaaaagtaaaagattaaatatgtaaaaagaaga 10370929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 89
Target Start/End: Original strand, 14876805 - 14876844
Alignment:
Q  50 tttgttgggggtgctaaacttctatgaaatatatattaaa 89  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  14876805 tttgttgggggtgccaaacttctatgtaatatatattaaa 14876844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 65 - 223
Target Start/End: Original strand, 32786643 - 32786794
Alignment:
Q  65 aaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaaga 164  Q
    ||||||||||| |||||||||||||||||      |||||||||||| |||||||||||| |||| ||||  ||||||||| || |||| ||||||| ||    
T  32786643 aaacttctatggaatatatattaaacggt------ttcaagaagtaaaaataattaataattggcttagtcgtataaattgtttcaaagaagcaagagga 32786736  T
Q  165 tgtggattggaatccccttaaaaaggttgtttttaataaaatatgtaaaagtagaagat 223  Q
    ||||| || |||||| ||| |||| ||| ||||||||| ||||| ||||||||||||||    
T  32786737 tgtgggtttgaatcctctttaaaacgtt-tttttaatacaatatctaaaagtagaagat 32786794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 182
Target Start/End: Complemental strand, 14533784 - 14533700
Alignment:
Q  98 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatcccct 182  Q
    |||||||| | || |||||||||||| |||| | |||| |||||| || ||||||||||||||| || || | || |||||||||    
T  14533784 gtttcaagtattatcaataattaatagctggacaagtggtataaaatgttttaaaggagcaagatgaagtcggtttgaatcccct 14533700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 50 - 188
Target Start/End: Original strand, 32633011 - 32633143
Alignment:
Q  50 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 149  Q
    |||||||||||||| || | |||||| |||||||||||||||||      |||||||||||||||||||||||||| || |||||| ||||||||| ||     
T  32633011 tttgttgggggtgccaatcatctatgtaatatatattaaacggt------ttcaagaagtaacaataattaataaccggtctagtggtataaattgtttg 32633104  T
Q  150 aaaggagcaagaagatgtggattggaatccccttaaaaa 188  Q
    |||| |||||||  |||||| || ||||||||| |||||    
T  32633105 aaagaagcaagagaatgtgggttcgaatcccctaaaaaa 32633143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 296 - 384
Target Start/End: Original strand, 15974128 - 15974217
Alignment:
Q  296 cactacaacaaccaaattctaattgatataatacacctaatatagtatataacaaaaat-ttggggatgtcatggcccctgtctgtccct 384  Q
    |||||||||||| ||||| | ||||| || ||||||||||||||||||||||  ||||| | ||||||| |||||| |||| ||| ||||    
T  15974128 cactacaacaactaaattgttattgaaatcatacacctaatatagtatataaggaaaatctaggggatgccatggcacctgcctgcccct 15974217  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 16717243 - 16717199
Alignment:
Q  50 tttgttgggggtgctaaacttctatgaaatatatattaaacggta 94  Q
    |||||||||||||| |||||| |||| ||||||||||||| ||||    
T  16717243 tttgttgggggtgccaaacttttatggaatatatattaaatggta 16717199  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 50 - 94
Target Start/End: Complemental strand, 19645496 - 19645452
Alignment:
Q  50 tttgttgggggtgctaaacttctatgaaatatatattaaacggta 94  Q
    |||||||||||||| |||||| |||| ||||||||||||| ||||    
T  19645496 tttgttgggggtgccaaacttttatggaatatatattaaatggta 19645452  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 112 - 242
Target Start/End: Original strand, 46851937 - 46852068
Alignment:
Q  112 caataattaataactggcctagtgatataaattgctttaaaggagcaagaagatgtggattggaatccccttaaaaaggttgtttttaa-taaaatatgt 210  Q
    |||||||||||||| || | |||| |||||| |  |||||| |||||||  ||||| | ||  |||||||| |||||  || | ||||| || ||||||     
T  46851937 caataattaataaccggtcaagtggtataaaatattttaaatgagcaagtggatgttggtttaaatcccctcaaaaactttttatttaaatacaatatgc 46852036  T
Q  211 aaaagtagaagattaaaaatgtaataagaaga 242  Q
    ||||||||||| |||||||||||| |||||||    
T  46852037 aaaagtagaaggttaaaaatgtaaaaagaaga 46852068  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 50 - 89
Target Start/End: Complemental strand, 50070226 - 50070187
Alignment:
Q  50 tttgttgggggtgctaaacttctatgaaatatatattaaa 89  Q
    |||||||||||||| ||||||||||| |||||||||||||    
T  50070226 tttgttgggggtgccaaacttctatgtaatatatattaaa 50070187  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 296 - 339
Target Start/End: Original strand, 52797844 - 52797887
Alignment:
Q  296 cactacaacaaccaaattctaattgatataatacacctaatata 339  Q
    ||||||||||||| |||||| ||||||||| |||||||||||||    
T  52797844 cactacaacaaccgaattcttattgatatattacacctaatata 52797887  T

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Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 33226323 - 33226285
Alignment:
Q  51 ttgttgggggtgctaaacttctatgaaatatatattaaa 89  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  33226323 ttgttgggggtgccaaacttctatgtaatatatattaaa 33226285  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 139
Target Start/End: Original strand, 2930410 - 2930451
Alignment:
Q  98 gtttcaagaagtaacaataattaataactggcctagtgatat 139  Q
    |||||||||||||||||||||||||||| | | |||||||||    
T  2930410 gtttcaagaagtaacaataattaataaccgacgtagtgatat 2930451  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 347
Target Start/End: Original strand, 46852133 - 46852170
Alignment:
Q  310 aattctaattgatataatacacctaatatagtatataa 347  Q
    ||||||||||| |||||||||||||||||| |||||||    
T  46852133 aattctaattgttataatacacctaatataatatataa 46852170  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 296 - 375
Target Start/End: Complemental strand, 26494504 - 26494424
Alignment:
Q  296 cactacaacaaccaaattctaattgatataatacacctaatatagtatataacaaaaat-ttggggatgtcatggcccctg 375  Q
    |||| ||||||| ||||| | ||||| || ||||||||||||||||||||||   |||| | |||||||||||||| ||||    
T  26494504 cactgcaacaactaaattattattgaaattatacacctaatatagtatataagggaaatctgggggatgtcatggcacctg 26494424  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 98 - 162
Target Start/End: Original strand, 52490263 - 52490327
Alignment:
Q  98 gtttcaagaagtaacaataattaataactggcctagtgatataaattgctttaaaggagcaagaa 162  Q
    |||||| ||||||||||||| ||||||| || ||||| |||||||||| || |||| | ||||||    
T  52490263 gtttcacgaagtaacaataactaataaccggtctagttatataaattgtttgaaagcatcaagaa 52490327  T

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Target: scaffold0325 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 89
Target Start/End: Original strand, 19783 - 19821
Alignment:
Q  51 ttgttgggggtgctaaacttctatgaaatatatattaaa 89  Q
    ||||||||||||| ||||||||||| |||||||||||||    
T  19783 ttgttgggggtgccaaacttctatgtaatatatattaaa 19821  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 50 - 187
Target Start/End: Original strand, 24888009 - 24888140
Alignment:
Q  50 tttgttgggggtgctaaacttctatgaaatatatattaaacggtaacagtttcaagaagtaacaataattaataactggcctagtgatataaattgcttt 149  Q
    |||||||||||||| ||| || |||| ||||||||||||  |||      |||||| | || |||||||||||| ||||   |||| |||||| || |||    
T  24888009 tttgttgggggtgccaaaattttatggaatatatattaactggt------ttcaagtattatcaataattaatagctggataagtggtataaaatgtttt 24888102  T
Q  150 aaaggagcaagaagatgtggattggaatccccttaaaa 187  Q
    |||||||||||| || |||| || ||||||||| ||||    
T  24888103 aaaggagcaagaggaagtgggtttgaatcccctcaaaa 24888140  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 309 - 392
Target Start/End: Original strand, 27084455 - 27084539
Alignment:
Q  309 aaattctaattgatataatacacctaatatagtatataacaaaaattt-ggggatgtcatggcccctgtctgtccctaaagagat 392  Q
    |||| ||| |||| |||||||||||||||||||||||||  ||| ||| ||||||| |||||| |||| ||  ||| ||||||||    
T  27084455 aaatcctagttgaaataatacacctaatatagtatataaggaaactttgggggatgccatggcacctgccttcccccaaagagat 27084539  T

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Target: scaffold0060 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 54 - 90
Target Start/End: Complemental strand, 35970 - 35934
Alignment:
Q  54 ttgggggtgctaaacttctatgaaatatatattaaac 90  Q
    |||||||||| ||||||| ||||||||||||||||||    
T  35970 ttgggggtgccaaacttccatgaaatatatattaaac 35934  T

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