View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5720-Insertion-1 (Length: 1119)

Name: NF5720-Insertion-1
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5720-Insertion-1
NF5720-Insertion-1
[»] chr8 (9 HSPs)
chr8 (324-803)||(9335255-9335751)
chr8 (7-263)||(9334998-9335252)
chr8 (19-368)||(9941392-9941738)
chr8 (36-368)||(8207867-8208195)
chr8 (837-942)||(9336150-9336255)
chr8 (855-924)||(8209157-8209226)
chr8 (877-924)||(9937755-9937802)
chr8 (800-830)||(9336026-9336056)
chr8 (571-649)||(9942098-9942176)
[»] chr1 (3 HSPs)
chr1 (38-368)||(42363007-42363334)
chr1 (860-924)||(42364910-42364974)
chr1 (584-654)||(42364073-42364143)


Alignment Details
Target: chr8 (Bit Score: 393; Significance: 0; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 324 - 803
Target Start/End: Original strand, 9335255 - 9335751
Alignment:
Q  324 gggtgaaaaacatgactagtagatgtgaaggtattggtgtgtaaaatatggttttaaattgcggttacggtcactgcgagtctactacaacacgcattgc 423  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||||||    
T  9335255 gggtgaaaaacatgactagtagatgtaaaggtattgatgtgtaaactatggttttaaattgcggttacggtcactgtgagtctactacgacacgcattgc 9335354  T
Q  424 -----------------cataaaatatggatcatttgtatattggggcaatgaaagaaataaagactaattgaattcaaaagtttcaaaacctcgtaaat 506  Q
                     |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||    
T  9335355 aagattagaaatgtagccataaaatatggatcatttgtatattggggcaatgaaagaaaaaaagactaattgaattcaaaagtttcataacctcgtaaat 9335454  T
Q  507 atgcaatatgcaacatttttgtgtgctctagcataaacggggctctacaatatactttcatcatgttctataaactcaattcctaaactcacgtcagttc 606  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9335455 atgcaatatgcaacatttttgtgtgttctagcataaacggggctctacaatatactttcatcatgttctataaactcaattcctaaactcacgtcagttc 9335554  T
Q  607 acaaactatagattttgaacaatattagaaaataaatcaaatgaaccatatgatttaaatatgcaaatgatccagtcagtagcggtcactagaggccaat 706  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  9335555 acaaactatagattttgaacaatattagaaaataaatcaaatgaaccatatgatttaaatatgcaaatgatccattcagtagcggtcaccagaggccaat 9335654  T
Q  707 atgaaatacaatgtacgggtttttgcaaaaacctgccacaagggccagtaactcaattcagtcatatggaaacataaatgatgaatgaaatcctcaa 803  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9335655 atgaaatacaatgtacaggtttttgcaaaaacctgctacaagggccagtaactcaattcagtcatatggaaacataaatgatgaatgaaatcctcaa 9335751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-111
Query Start/End: Original strand, 7 - 263
Target Start/End: Original strand, 9334998 - 9335252
Alignment:
Q  7 agttcaagaatccaaccatttataggaaccacgaacatttcgatcatggtgattatagagttccggaagcatcttcaaaattcttatttggggcacaatt 106  Q
    |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  9334998 agttcaagaatc-aaccatttataggagccacgaacatttcgatcatggtgattatagagttccggaagcatcttcaaaattcttattgcgggcacaatt 9335096  T
Q  107 tttgctccgaattctctagtagcatgaagacagataattatatcattatatgggaacaataaaacagacgcaacaaccaatatagattttgcaacaatat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||    
T  9335097 tttgctccgaattctctagtagcatgaagacagataattatatcattatatgggaacaataaaacagacacaacaaccagtacagattttgcaacaatat 9335196  T
Q  207 gccaaaccttaaagcttgactcataacatctattgcaggcccctgcgcattacttcc 263  Q
    | | || |||||||||||||||||||||||||||||||||||||||||||| |||||    
T  9335197 g-ctaatcttaaagcttgactcataacatctattgcaggcccctgcgcattgcttcc 9335252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 19 - 368
Target Start/End: Original strand, 9941392 - 9941738
Alignment:
Q  19 caaccatttataggaaccacgaacatttcgatcatggtgattatagagttccggaagcatcttcaaaattcttatttggggcacaatttttgctccgaat 118  Q
    |||||||||| ||||  |||  |||||| |||| ||||||| | ||||||||||||| | ||||||||||||| || ||||||| ||||| ||||| |||    
T  9941392 caaccatttagaggatgcactgacattttgatcttggtgatcaaagagttccggaagaaccttcaaaattctttttgggggcacgattttagctccaaat 9941491  T
Q  119 tctctagtagcatgaagacagataattatatcattatatgggaacaataaaacagacgcaacaaccaatatagattttgcaacaatatgccaaaccttaa 218  Q
    || |||| || ||||||||||||||||||||||||||||| || ||| |||||||||   ||| | | |||||||||||||||   || |||||||||||    
T  9941492 tcactagcagtatgaagacagataattatatcattatatgagagcaacaaaacagac---acagctagtatagattttgcaacgcaattccaaaccttaa 9941588  T
Q  219 agcttgactcataacatctattgcaggcccctgcgcattacttcctctgtactttattgctttctccattgcatcctaaaattaccaaaatcctaaataa 318  Q
    |||||||  ||||||||||||||||||| ||  ||| |||     | | | ||||||  ||||||||||||||||||||||| ||||||| ||| |||||    
T  9941589 agcttgaaacataacatctattgcaggcaccaccgctttagcaaattttttctttatcactttctccattgcatcctaaaatcaccaaaa-ccttaataa 9941687  T
Q  319 agaaagggt-gaaaaacatgactagtagatgtgaaggtattggtgtgtaaa 368  Q
    ||||| |||  |||||||||||||||||||| |||| ||||| ||||||||    
T  9941688 agaaatggtcaaaaaacatgactagtagatgcgaagttattgatgtgtaaa 9941738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 111; E-Value: 2e-55
Query Start/End: Original strand, 36 - 368
Target Start/End: Original strand, 8207867 - 8208195
Alignment:
Q  36 cacgaacatttcgatcatggtgattatagagttccggaagcatcttcaaaattcttatttggggcacaatttttgctccgaattctctagtagcatgaag 135  Q
    ||||||||||| |||| ||||||| | ||||||||||||||||| ||||||||||| || ||||||||||||| ||||| ||||| |||| |  || |||    
T  8207867 cacgaacattttgatcttggtgatcaaagagttccggaagcatcctcaaaattctttttgggggcacaattttagctccaaattcactagcaatataaag 8207966  T
Q  136 acagataattatatcattatatgggaacaataaaacagacgcaacaaccaatatagattttgcaacaatatgccaaaccttaaagcttgactcataacat 235  Q
     || ||||||||  |||| |||| || ||| |||||||||   ||| | | ||||||||||||||| | || ||||||||||||||||||  ||||||||    
T  8207967 gcatataattatcccattgtatgagagcaacaaaacagac---acagctattatagattttgcaacgagattccaaaccttaaagcttgaaacataacat 8208063  T
Q  236 ctattgcaggcccctgcgcattacttcctctgtactttattgctttctccattgcatcctaaaattaccaaaatcctaaataaagaaagggtgaaaaaca 335  Q
    ||||||||||| ||   || |||    || | | |||||||||||||||||||||||||||||||||||||||  || ||||| |||||| |||||| ||    
T  8208064 ctattgcaggcaccactgctttagcaactttattctttattgctttctccattgcatcctaaaattaccaaaa-gcttaataatgaaaggatgaaaagca 8208162  T
Q  336 tgactagtagatgtgaaggtattggtgtgtaaa 368  Q
    ||||||||||||| |||| ||||| ||||||||    
T  8208163 tgactagtagatgcgaagttattgatgtgtaaa 8208195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 837 - 942
Target Start/End: Original strand, 9336150 - 9336255
Alignment:
Q  837 aagtagaaatcaagtattaaattattatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttcaactgcacatca 936  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9336150 aagtagaaatcaagtattaaattattatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttcaactgcacatca 9336249  T
Q  937 acattc 942  Q
    ||||||    
T  9336250 acattc 9336255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 855 - 924
Target Start/End: Original strand, 8209157 - 8209226
Alignment:
Q  855 aaattattatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc 924  Q
    ||||||| |||||||| | || ||||||||||||||  |||||||||||||||| |||||||||||||||    
T  8209157 aaattatgatcacctcgcagcgtcagcatctgcagcatgcaagtaagcaatcaatgcatcaagtgccttc 8209226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 877 - 924
Target Start/End: Original strand, 9937755 - 9937802
Alignment:
Q  877 tcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc 924  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  9937755 tcagcatctgcatctcgcaagtaagcaatcaacgcatcgagtgccttc 9937802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 800 - 830
Target Start/End: Original strand, 9336026 - 9336056
Alignment:
Q  800 tcaaattcactcaaataaaaaatgttaaata 830  Q
    |||||||||||||||||||||||||||||||    
T  9336026 tcaaattcactcaaataaaaaatgttaaata 9336056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 571 - 649
Target Start/End: Original strand, 9942098 - 9942176
Alignment:
Q  571 gttctataaactcaattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatg 649  Q
    |||||| ||||||||||||||||||  | |||||| |||| || |||||||||| ||| |||| | |||||| ||||||    
T  9942098 gttctacaaactcaattcctaaacttgcatcagtttacaacctctagattttgagcaaaattacagaataaagcaaatg 9942176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 1e-56; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 1e-56
Query Start/End: Original strand, 38 - 368
Target Start/End: Original strand, 42363007 - 42363334
Alignment:
Q  38 cgaacatttcgatcatggtgattatagagttccggaagcatcttcaaaattcttatttggggcacaatttttgctccgaattctctagtagcatgaagac 137  Q
    ||||||||| |||| |||||||   |||||||||||||||| |||||||||||| || ||||||||||||| | ||| ||||| |||| ||  |||||||    
T  42363007 cgaacattttgatcttggtgatcgaagagttccggaagcattttcaaaattctttttgggggcacaattttagatccaaattcactagcagtgtgaagac 42363106  T
Q  138 agataattatatcattatatgggaacaataaaacagacgcaacaaccaatatagattttgcaacaatatgccaaaccttaaagcttgactcataacatct 237  Q
    |||||| ||||||||||||||  |  || |||| |||   |||| | | ||||||||||||||| | || ||||||||||||||||||  ||||||||||    
T  42363107 agataagtatatcattatatgatagtaacaaaataga---aacagctactatagattttgcaacgagattccaaaccttaaagcttgaaacataacatct 42363203  T
Q  238 attgcaggcccctgcgcattacttcctctgtactttattgctttctccattgcatcctaaaattaccaaaatcctaaataaagaaagggtgaaaaacatg 337  Q
    ||||||||| ||   || |||    || ||| |||||| |||||||||||||||||||||||||||||| | ||| ||||| ||||||  ||||| ||||    
T  42363204 attgcaggcaccactgctttagcaactttgttctttatcgctttctccattgcatcctaaaattaccaagagccttaataatgaaaggacgaaaagcatg 42363303  T
Q  338 actagtagatgtgaaggtattggtgtgtaaa 368  Q
    |||||||||||||||| ||||||| ||||||    
T  42363304 actagtagatgtgaagttattggtatgtaaa 42363334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 860 - 924
Target Start/End: Original strand, 42364910 - 42364974
Alignment:
Q  860 attatcacctccccgcatcagcatctgcagctcgcaagtaagcaatcaacgcatcaagtgccttc 924  Q
    |||||||||| |  || |||||||||||||||||||||||||||||||| |||||||||||||||    
T  42364910 attatcacctgctagcgtcagcatctgcagctcgcaagtaagcaatcaatgcatcaagtgccttc 42364974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 584 - 654
Target Start/End: Original strand, 42364073 - 42364143
Alignment:
Q  584 aattcctaaactcacgtcagttcacaaactatagattttgaacaatattagaaaataaatcaaatgaacca 654  Q
    ||||||||||||| | |||||| | | ||| |||||||||||||| |||| ||||||||||||||| ||||    
T  42364073 aattcctaaactcgcatcagtttaaacactctagattttgaacaaaattacaaaataaatcaaatgcacca 42364143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University