View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5720-Insertion-3 (Length: 436)
Name: NF5720-Insertion-3
Description: NF5720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5720-Insertion-3 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 8 - 436
Target Start/End: Original strand, 22343922 - 22344351
Alignment:
| Q |
8 |
cttcgaggagaagccttgtcagataccgaggattgccacagcttcttggacttgaggcgatttcagcgtcgatgtctgcatagcgcggtgaataacaaac |
107 |
Q |
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| T |
22343922 |
cttcgaggagaagccttgtcagataccgcggattgccacagcttcttggacttgaagcgatttcagcgtcgatgtctgcatagcgcggtgaataacagac |
22344021 |
T |
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| Q |
108 |
atgatgctcaaccctatatggatacttcctgcatccgaattgaaaagcacatgaaattaat-aaaacagtatcaacagtgaatgcgacacagtagatttc |
206 |
Q |
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| T |
22344022 |
atgatgctcaactctatatggatacttcctgcatccaaattgaaatgcacttgaaattcattaaaacagcattaatagtgaatgcgacttagtaggctcc |
22344121 |
T |
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| Q |
207 |
atgcgacacaaacacgcatatgacgtataagagaaaataaaacttgaaatcgtccattcaatattaactctgcattttacacagattcacacaaagatgc |
306 |
Q |
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| T |
22344122 |
atgccacacaaacacgcatacgaagtattagataaaataaaacgtgaattcgtccattcaacattaacgctgctttatacacagattcacacaaacatgc |
22344221 |
T |
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| Q |
307 |
tgttgaatgagtatgaagaattcacctatcaataagtttaggcttttccttgtacggtttcacaagaacccgagatcctcgaacataatgaggatttccc |
406 |
Q |
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| T |
22344222 |
tattgaatgagaataaatgaatcacctgtcaataagttttggcttctccttgtatggtttcacaagaacccgagatcctcgaacataatgaggatttccc |
22344321 |
T |
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| Q |
407 |
ttatccaaaatcattttaacagtttctggt |
436 |
Q |
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| T |
22344322 |
ttatccaaaatcattttaacagtttctggt |
22344351 |
T |
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Target: chr5 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 357 - 435
Target Start/End: Original strand, 41379058 - 41379136
Alignment:
| Q |
357 |
tgtacggtttcacaagaacccgagatcctcgaacataatgaggatttcccttatccaaaatcattttaacagtttctgg |
435 |
Q |
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| T |
41379058 |
tgtaaggtttcacaagcacacgagagccacgaacataatgaggatttcccttgtccaaaatcattctcacggtttctgg |
41379136 |
T |
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